Structure and function analysis of flexible alignment regions in proteins

Structure and function analysis of flexible alignment regions in proteins

Bibliographic Details
Main Authors:	Heringa Jaap, Feenstra K, Reijden Anneke, Pirovano Walter
Format:	Article
Language:	English
Published:	BMC 2009-10-01
Series:	BMC Bioinformatics

Similar Items

The meaning of alignment: lessons from structural diversity
by: Heringa Jaap, et al.
Published: (2008-12-01)

Motif-Aware PRALINE: Improving the alignment of motif regions.
by: Maurits Dijkstra, et al.
Published: (2018-11-01)

Protein analysis tools and services at IBIVU
by: Brandt Bernd W., et al.
Published: (2011-06-01)

Quantifying the displacement of mismatches in multiple sequence alignment benchmarks.
by: Punto Bawono, et al.
Published: (2015-01-01)

Natalie 2.0: Sparse Global Network Alignment as a Special Case of Quadratic Assignment
by: Mohammed El-Kebir, et al.
Published: (2015-11-01)

CGHnormaliter: an iterative strategy to enhance normalization of array CGH data with imbalanced aberrations
by: Pirovano Walter, et al.
Published: (2009-08-01)

CLUB-MARTINI: Selecting Favourable Interactions amongst Available Candidates, a Coarse-Grained Simulation Approach to Scoring Docking Decoys.
by: Qingzhen Hou, et al.
Published: (2016-01-01)

FlexSnap: Flexible Non-sequential Protein Structure Alignment
by: Bystroff Chris, et al.
Published: (2010-01-01)

Towards a knowledge graph for pre-/probiotics and microbiota–gut–brain axis diseases
by: Ting Liu, et al.
Published: (2022-11-01)

CAB-Align: A Flexible Protein Structure Alignment Method Based on the Residue-Residue Contact Area.
by: Genki Terashi, et al.
Published: (2015-01-01)

Flexibility in MuA transposase family protein structures: functional mapping with scanning mutagenesis and sequence alignment of protein homologues.
by: Tiina S Rasila, et al.
Published: (2012-01-01)

Nano-scale alignment of proteins on a flexible DNA backbone.
by: Tatsuya Nojima, et al.
Published: (2012-01-01)

CSAlign and CSAlign-Dock: Structure alignment of ligands considering full flexibility and application to protein–ligand docking
by: Sohee Kwon, et al.
Published: (2023-01-01)

Deformed alignment of super-resolution images for semi-flexible structures.
by: Xiaoyu Shi, et al.
Published: (2019-01-01)

A protein prioritization approach tailored for the FA/BRCA pathway.
by: Anneke Haitjema, et al.
Published: (2013-01-01)

Correction: A Protein Prioritization Approach Tailored for the FA/BRCA Pathway.
by: Anneke Haitjema, et al.
Published: (2013-01-01)

Analysis of IT infrastructure flexibility impacts on IT-Business strategic alignment
by: Yugo Isal, et al.
Published: (2016-09-01)

Connectivity independent protein-structure alignment: a hierarchical approach
by: Schmidt-Goenner Tobias, et al.
Published: (2006-11-01)

Protein function annotation with Structurally Aligned Local Sites of Activity (SALSAs)
by: Wang Zhouxi, et al.
Published: (2013-02-01)

Construction and Experimental Validation of a Petri Net Model of Wnt/β-Catenin Signaling.
by: Annika Jacobsen, et al.
Published: (2016-01-01)

Convergent algorithms for protein structural alignment
by: Martínez José, et al.
Published: (2007-08-01)

Topology independent protein structural alignment
by: DasGupta Bhaskar, et al.
Published: (2007-10-01)

Formatt: Correcting protein multiple structural alignments by incorporating sequence alignment
by: Daniels Noah M, et al.
Published: (2012-10-01)

Inferences from structural comparison: flexibility, secondary structure wobble and sequence alignment optimization
by: Zhang Gaihua, et al.
Published: (2012-09-01)

Wochenende — modular and flexible alignment-based shotgun metagenome analysis
by: Ilona Rosenboom, et al.
Published: (2022-11-01)

Unidirectional Electron-Tunnelling Flexible PDMS Strain Sensor with Aligned Carbon Nanotubes
by: Tim Mike de Rijk, et al.
Published: (2023-10-01)

Spatial alignment of functional regions in fMRI
by: Tobón, Gabriel Andres
Published: (2011)

Exploiting physical properties in protein structure alignment
by: Sahinidis Nick, et al.
Published: (2010-12-01)

Alignment of protein structures in the presence of domain motions
by: Mosca Roberto, et al.
Published: (2008-08-01)

Comparison of protein structures by growing neighborhood alignments
by: Bhattacharyya Chiranjib, et al.
Published: (2007-03-01)

Multiple structure alignment and consensus identification for proteins
by: Ye Jieping, et al.
Published: (2010-02-01)

Flexible alignment in 3D and its applications
by: Kalaszi A, et al.
Published: (2011-04-01)

Fr-TM-align: a new protein structural alignment method based on fragment alignments and the TM-score
by: Skolnick Jeffrey, et al.
Published: (2008-12-01)

HIV-1 replication fitness of HLA-B*57/58:01 CTL escape variants is restored by the accumulation of compensatory mutations in gag.
by: Esther F Gijsbers, et al.
Published: (2013-01-01)

The ability of transcription factors to differentially regulate gene expression is a crucial component of the mechanism underlying inversion, a frequently observed genetic interaction pattern.
by: Saman Amini, et al.
Published: (2019-05-01)

An empirical study of the role of IT flexibility and IT capability in IT-business strategic alignment
by: Jorfi, S., et al.
Published: (2017)

MP-T: improving membrane protein alignment for structure prediction.
by: Hill, JR, et al.
Published: (2013)

Cross-phyla protein annotation by structural prediction and alignment
by: Fabian Ruperti, et al.
Published: (2023-05-01)

Protein sequence and structure alignments within one framework
by: Margraf Thomas, et al.
Published: (2008-04-01)

GADP-align: A genetic algorithm and dynamic programming-based method for structural alignment of proteins
by: Soraya Mirzaei, et al.
Published: (2021-07-01)