Cellulitis Caused by a Novel Cupriavidus Species Strain J1218 Identified by Whole Genome Sequencing
We report a case of cellulitis caused by a novel Cupriavidus species identified using whole-genome sequence analysis. Subcutaneous tissue biopsies from the left lower leg of a 67-year-old man who suffered from cellulitis were cultured. Round, convex, gray and non-hemolytic colonies were recovered af...
| Main Authors: | , , , |
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| Format: | Article |
| Language: | English |
| Published: |
Korean Society of Clinical Microbiology
2019-12-01
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| Series: | Annals of Clinical Microbiology |
| Subjects: | |
| Online Access: | https://www.acm.or.kr/article_aws/?num=kjcm2019_105 |
| _version_ | 1818432684889735168 |
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| author | Young Jin Ko Soo-Young Yoon Chae Seung Lim Chang Kyu Lee |
| author_facet | Young Jin Ko Soo-Young Yoon Chae Seung Lim Chang Kyu Lee |
| author_sort | Young Jin Ko |
| collection | DOAJ |
| description | We report a case of cellulitis caused by a novel
Cupriavidus species identified using whole-genome
sequence analysis. Subcutaneous tissue biopsies
from the left lower leg of a 67-year-old man who suffered
from cellulitis were cultured. Round, convex,
gray and non-hemolytic colonies were recovered after
72-h incubation. 16S rRNA sequence analysis
showed 98.6% similarity with Cupriavidus basilensis
DSM 11853(T) in the NCBI database and 99.9%
similarity with C. basilensis KF708 in the EzBioCloud
database. Genomic analysis using the MiSeq platform
(Illumina, USA) and the TrueBac ID database
(ChunLab, Korea) revealed that the average nucleotide
identity (ANI) of this strain with C. basilensis
DSM 11853(T) was 87.6%. The patient was treated
with oral cefditoren pivoxil for 9 weeks. This study is
the first to report cellulitis caused by Cupriavidus
species strain J1218. (Ann Clin Microbiol 2019;22:105
-109) |
| first_indexed | 2024-12-14T16:09:07Z |
| format | Article |
| id | doaj.art-b47f56845cd447428d83ae048a9eb460 |
| institution | Directory Open Access Journal |
| issn | 2288-0585 2288-6850 |
| language | English |
| last_indexed | 2024-12-14T16:09:07Z |
| publishDate | 2019-12-01 |
| publisher | Korean Society of Clinical Microbiology |
| record_format | Article |
| series | Annals of Clinical Microbiology |
| spelling | doaj.art-b47f56845cd447428d83ae048a9eb4602022-12-21T22:55:02ZengKorean Society of Clinical MicrobiologyAnnals of Clinical Microbiology2288-05852288-68502019-12-0122410510910.5145/ACM.2019.22.4.105kjcm2019_105Cellulitis Caused by a Novel Cupriavidus Species Strain J1218 Identified by Whole Genome SequencingYoung Jin Ko0Soo-Young Yoon1Chae Seung Lim2Chang Kyu Lee3 Department of Laboratory Medicine, Chosun University Hospital, Gwangju, Department of Laboratory Medicine, Korea University College of Medicine, Seoul Department of Laboratory Medicine, Korea University College of Medicine, Seoul Department of Laboratory Medicine, Korea University College of Medicine, Seoul We report a case of cellulitis caused by a novel Cupriavidus species identified using whole-genome sequence analysis. Subcutaneous tissue biopsies from the left lower leg of a 67-year-old man who suffered from cellulitis were cultured. Round, convex, gray and non-hemolytic colonies were recovered after 72-h incubation. 16S rRNA sequence analysis showed 98.6% similarity with Cupriavidus basilensis DSM 11853(T) in the NCBI database and 99.9% similarity with C. basilensis KF708 in the EzBioCloud database. Genomic analysis using the MiSeq platform (Illumina, USA) and the TrueBac ID database (ChunLab, Korea) revealed that the average nucleotide identity (ANI) of this strain with C. basilensis DSM 11853(T) was 87.6%. The patient was treated with oral cefditoren pivoxil for 9 weeks. This study is the first to report cellulitis caused by Cupriavidus species strain J1218. (Ann Clin Microbiol 2019;22:105 -109)https://www.acm.or.kr/article_aws/?num=kjcm2019_105cellulitiscupriaviduswhole-genome sequencing16s rrna |
| spellingShingle | Young Jin Ko Soo-Young Yoon Chae Seung Lim Chang Kyu Lee Cellulitis Caused by a Novel Cupriavidus Species Strain J1218 Identified by Whole Genome Sequencing Annals of Clinical Microbiology cellulitis cupriavidus whole-genome sequencing 16s rrna |
| title | Cellulitis Caused by a Novel Cupriavidus Species Strain J1218
Identified by Whole Genome Sequencing |
| title_full | Cellulitis Caused by a Novel Cupriavidus Species Strain J1218
Identified by Whole Genome Sequencing |
| title_fullStr | Cellulitis Caused by a Novel Cupriavidus Species Strain J1218
Identified by Whole Genome Sequencing |
| title_full_unstemmed | Cellulitis Caused by a Novel Cupriavidus Species Strain J1218
Identified by Whole Genome Sequencing |
| title_short | Cellulitis Caused by a Novel Cupriavidus Species Strain J1218
Identified by Whole Genome Sequencing |
| title_sort | cellulitis caused by a novel cupriavidus species strain j1218 identified by whole genome sequencing |
| topic | cellulitis cupriavidus whole-genome sequencing 16s rrna |
| url | https://www.acm.or.kr/article_aws/?num=kjcm2019_105 |
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