Whole genome sequence data of Stenotrophomonas maltophilia SCAID WND1-2022 (370)
The whole genome sequence of a hospital infection agent, Stenotrophomonas maltophilia SCAID WND1-2022 (370), is reported. Raw PacBio generated reads and the genome sequence were deposited at NCBI under BioProject PRJNA754843. The genome comprises two replicons: 4,880,425 bp long chromosome comprisin...
| Main Authors: | , , , , , , , , , , , |
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| Format: | Article |
| Language: | English |
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Elsevier
2022-12-01
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| Series: | Data in Brief |
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| Online Access: | http://www.sciencedirect.com/science/article/pii/S235234092200899X |
| _version_ | 1828123725680082944 |
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| author | Ilya Korotetskiy Ardak Jumagaziyeva Bahkytzhan Kerimzhanova Oleg Reva Tatyana Kuznetsova Sergey Shilov Ludmila Ivanova Natalya Zubenko Raikhan Parenova Zhanar Iskakbayeva Bolatbek Baimakhanov Aimana Bekmuhamedova |
| author_facet | Ilya Korotetskiy Ardak Jumagaziyeva Bahkytzhan Kerimzhanova Oleg Reva Tatyana Kuznetsova Sergey Shilov Ludmila Ivanova Natalya Zubenko Raikhan Parenova Zhanar Iskakbayeva Bolatbek Baimakhanov Aimana Bekmuhamedova |
| author_sort | Ilya Korotetskiy |
| collection | DOAJ |
| description | The whole genome sequence of a hospital infection agent, Stenotrophomonas maltophilia SCAID WND1-2022 (370), is reported. Raw PacBio generated reads and the genome sequence were deposited at NCBI under BioProject PRJNA754843. The genome comprises two replicons: 4,880,425 bp long chromosome comprising 4524 proteins and functional RNA coding genes and 38,606 bp long plasmid containing 40 CDS. Both replicons were methylated at third cytosine residues of ACCTC motifs. The taxonomic provenance of SCAID WND1-2022 (370) was determined by calculating sequence similarity to the reference genomes at NCBI that showed the highest 97.35% identity to S. maltophilia ISMMS4. Many antibiotic resistance and virulence genes were identified on the chromosome of S. maltophilia SCAID WND1-2022 (370), which include multiple efflux pumps, beta-lactamases, and genes involved in biofilm formation. The plasmid sequence was dissimilar to any known plasmid and seemingly was acquired from a distant microorganism. Plasmid-born genes possibly contributed to the virulence of the pathogens, but not to its drug resistance. |
| first_indexed | 2024-04-11T14:56:29Z |
| format | Article |
| id | doaj.art-b5288f62aaac49ff94092d0ca41a71b3 |
| institution | Directory Open Access Journal |
| issn | 2352-3409 |
| language | English |
| last_indexed | 2024-04-11T14:56:29Z |
| publishDate | 2022-12-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Data in Brief |
| spelling | doaj.art-b5288f62aaac49ff94092d0ca41a71b32022-12-22T04:17:15ZengElsevierData in Brief2352-34092022-12-0145108694Whole genome sequence data of Stenotrophomonas maltophilia SCAID WND1-2022 (370)Ilya Korotetskiy0Ardak Jumagaziyeva1Bahkytzhan Kerimzhanova2Oleg Reva3Tatyana Kuznetsova4Sergey Shilov5Ludmila Ivanova6Natalya Zubenko7Raikhan Parenova8Zhanar Iskakbayeva9Bolatbek Baimakhanov10Aimana Bekmuhamedova11JSC Scientific Center for Anti-Infectious Drugs, Almaty, Kazakhstan; Corresponding author.JSC Scientific Center for Anti-Infectious Drugs, Almaty, KazakhstanJSC Scientific Center for Anti-Infectious Drugs, Almaty, KazakhstanCentre for Bioinformatics and Computational Biology, Department of Biochemistry, Genetics, and Microbiology, University of Pretoria, Pretoria, South AfricaJSC Scientific Center for Anti-Infectious Drugs, Almaty, KazakhstanJSC Scientific Center for Anti-Infectious Drugs, Almaty, KazakhstanJSC Scientific Center for Anti-Infectious Drugs, Almaty, KazakhstanJSC Scientific Center for Anti-Infectious Drugs, Almaty, KazakhstanJSC Scientific Center for Anti-Infectious Drugs, Almaty, KazakhstanJSC Scientific Center for Anti-Infectious Drugs, Almaty, KazakhstanJSC National Research Center of Surgery named after Syzganov, Department of Vascular Surgery, Almaty, KazakhstanJSC National Research Center of Surgery named after Syzganov, Department of Vascular Surgery, Almaty, KazakhstanThe whole genome sequence of a hospital infection agent, Stenotrophomonas maltophilia SCAID WND1-2022 (370), is reported. Raw PacBio generated reads and the genome sequence were deposited at NCBI under BioProject PRJNA754843. The genome comprises two replicons: 4,880,425 bp long chromosome comprising 4524 proteins and functional RNA coding genes and 38,606 bp long plasmid containing 40 CDS. Both replicons were methylated at third cytosine residues of ACCTC motifs. The taxonomic provenance of SCAID WND1-2022 (370) was determined by calculating sequence similarity to the reference genomes at NCBI that showed the highest 97.35% identity to S. maltophilia ISMMS4. Many antibiotic resistance and virulence genes were identified on the chromosome of S. maltophilia SCAID WND1-2022 (370), which include multiple efflux pumps, beta-lactamases, and genes involved in biofilm formation. The plasmid sequence was dissimilar to any known plasmid and seemingly was acquired from a distant microorganism. Plasmid-born genes possibly contributed to the virulence of the pathogens, but not to its drug resistance.http://www.sciencedirect.com/science/article/pii/S235234092200899XHospital-associated pathogenAntimicrobial resistanceMultidrug-resistantSequencingMethylation |
| spellingShingle | Ilya Korotetskiy Ardak Jumagaziyeva Bahkytzhan Kerimzhanova Oleg Reva Tatyana Kuznetsova Sergey Shilov Ludmila Ivanova Natalya Zubenko Raikhan Parenova Zhanar Iskakbayeva Bolatbek Baimakhanov Aimana Bekmuhamedova Whole genome sequence data of Stenotrophomonas maltophilia SCAID WND1-2022 (370) Data in Brief Hospital-associated pathogen Antimicrobial resistance Multidrug-resistant Sequencing Methylation |
| title | Whole genome sequence data of Stenotrophomonas maltophilia SCAID WND1-2022 (370) |
| title_full | Whole genome sequence data of Stenotrophomonas maltophilia SCAID WND1-2022 (370) |
| title_fullStr | Whole genome sequence data of Stenotrophomonas maltophilia SCAID WND1-2022 (370) |
| title_full_unstemmed | Whole genome sequence data of Stenotrophomonas maltophilia SCAID WND1-2022 (370) |
| title_short | Whole genome sequence data of Stenotrophomonas maltophilia SCAID WND1-2022 (370) |
| title_sort | whole genome sequence data of stenotrophomonas maltophilia scaid wnd1 2022 370 |
| topic | Hospital-associated pathogen Antimicrobial resistance Multidrug-resistant Sequencing Methylation |
| url | http://www.sciencedirect.com/science/article/pii/S235234092200899X |
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