Trainable watershed-based model for cornea endothelial cell segmentation
Segmentation of the medical image plays a significant role when it comes to diagnosis using computer aided system. This article focuses on the human corneal endothelium’s health, which is one of the filed research interests, especially in the human cornea. Various pathological environments fasten th...
| Main Authors: | , |
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| Format: | Article |
| Language: | English |
| Published: |
De Gruyter
2022-03-01
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| Series: | Journal of Intelligent Systems |
| Subjects: | |
| Online Access: | https://doi.org/10.1515/jisys-2021-0191 |
| _version_ | 1797998387406045184 |
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| author | Sami Ahmed Saifullah Rahim Mohd Shafry Mohd |
| author_facet | Sami Ahmed Saifullah Rahim Mohd Shafry Mohd |
| author_sort | Sami Ahmed Saifullah |
| collection | DOAJ |
| description | Segmentation of the medical image plays a significant role when it comes to diagnosis using computer aided system. This article focuses on the human corneal endothelium’s health, which is one of the filed research interests, especially in the human cornea. Various pathological environments fasten the extermination of the endothelial cells, which in turn decreases the cell density in an abnormal manner. Dead cells worsen the hexagonal design. The mutilated endothelial cells can no longer revive back and that gives room for neighbouring cells to migrate and expand so that they can fill in the space. The latter results in cell elongation that is unpredictable as well as increase in size and thinning. Cell density and shape are therefore considered major parameters when it comes to explaining the health condition attributed to corneal endothelium. In this study, medical feature extraction was obtained depending on the segmentation of the endothelial cell boundary, and the task of segmentation of such objects especially the thin, transparent, and unclear cell boundary is considered challenging due to the nature of the image capture during endothelium layer examination by ophthalmologists using confocal or specular microscopy. The resulting image suffers from various issues that affect the quality of the image. Low quality is due to non-uniformity of illumination and the presence of a lot of noise and artefacts resulting from high amounts of distortion, and most of these limitations are present because of the nature of the imaging modality. Usually, images contain certain kind of noise and also continuous shadow. Furthermore, the cells are separated by poor border, thereby leading to great difficulty in the segmentation of the images. The irregular shape of cell and also the contrast of such images seem to be low as they possess blurry boundaries with diverse objects existing in addition to the lack of homogeneity. The main aim of the study is to propose and develop a totally automatic, robust, and real-time model for the segmentation of endothelial cells of the human cornea obtained by in vivo microscopy and computation of different clinical features of endothelial cells. To achieve the aim of this study a new scheme of image enhancement was proposed such as the Contrast-Limited Adaptive Histogram Equalisation (CLAHE) technique to enhance contrast. After that, a new image denoising technique called Wavelet Transform Filter and Butterworth Bandpass for Segmentation is used. Subsequently, brightness level correction is applied by using the moving average filter and the CLAHE to reduce the effects of the non-uniform image lighting produced as a result of the previous step. The main aim of this article is the segmentation of endothelial cells, which involves precise detection of the endothelial contours. So a new segmentation model was proposed such that the shape of the cells will be extracted, and the contours were highlighted. This stage is followed by clinical feature extraction and uses the features for diagnosis. In this stage, several relevant clinical features such as pleomorphism mean cell perimeter, mean cell density, mean cell area, and polymegathism are extracted. The role of these clinical features is crucial for the early detection of corneal pathologies as well as the evaluation of the health of the corneal endothelium layer. The findings of this study were promising. |
| first_indexed | 2024-04-11T10:47:58Z |
| format | Article |
| id | doaj.art-b60137b17e844a9ba3a7d34fdb7095a9 |
| institution | Directory Open Access Journal |
| issn | 2191-026X |
| language | English |
| last_indexed | 2024-04-11T10:47:58Z |
| publishDate | 2022-03-01 |
| publisher | De Gruyter |
| record_format | Article |
| series | Journal of Intelligent Systems |
| spelling | doaj.art-b60137b17e844a9ba3a7d34fdb7095a92022-12-22T04:29:00ZengDe GruyterJournal of Intelligent Systems2191-026X2022-03-0131137039210.1515/jisys-2021-0191Trainable watershed-based model for cornea endothelial cell segmentationSami Ahmed Saifullah0Rahim Mohd Shafry Mohd1Faculty of Engineering, School of Computing, University Technology Malaysia, Utm Skudai, 813110 Johor, MalaysiaFaculty Engineering, School of Computing, Media and Games Innovation Centre of Excellence (MaGIC-X) UTM-IRDA Digital Media Centre, Institute of Human-Centred (iHumEn) T03, Level 1, University-Industry Research Laboratory (UIRL), Universiti Teknologi Malaysia, 81310 UTM Skudai, Johor, MalaysiaSegmentation of the medical image plays a significant role when it comes to diagnosis using computer aided system. This article focuses on the human corneal endothelium’s health, which is one of the filed research interests, especially in the human cornea. Various pathological environments fasten the extermination of the endothelial cells, which in turn decreases the cell density in an abnormal manner. Dead cells worsen the hexagonal design. The mutilated endothelial cells can no longer revive back and that gives room for neighbouring cells to migrate and expand so that they can fill in the space. The latter results in cell elongation that is unpredictable as well as increase in size and thinning. Cell density and shape are therefore considered major parameters when it comes to explaining the health condition attributed to corneal endothelium. In this study, medical feature extraction was obtained depending on the segmentation of the endothelial cell boundary, and the task of segmentation of such objects especially the thin, transparent, and unclear cell boundary is considered challenging due to the nature of the image capture during endothelium layer examination by ophthalmologists using confocal or specular microscopy. The resulting image suffers from various issues that affect the quality of the image. Low quality is due to non-uniformity of illumination and the presence of a lot of noise and artefacts resulting from high amounts of distortion, and most of these limitations are present because of the nature of the imaging modality. Usually, images contain certain kind of noise and also continuous shadow. Furthermore, the cells are separated by poor border, thereby leading to great difficulty in the segmentation of the images. The irregular shape of cell and also the contrast of such images seem to be low as they possess blurry boundaries with diverse objects existing in addition to the lack of homogeneity. The main aim of the study is to propose and develop a totally automatic, robust, and real-time model for the segmentation of endothelial cells of the human cornea obtained by in vivo microscopy and computation of different clinical features of endothelial cells. To achieve the aim of this study a new scheme of image enhancement was proposed such as the Contrast-Limited Adaptive Histogram Equalisation (CLAHE) technique to enhance contrast. After that, a new image denoising technique called Wavelet Transform Filter and Butterworth Bandpass for Segmentation is used. Subsequently, brightness level correction is applied by using the moving average filter and the CLAHE to reduce the effects of the non-uniform image lighting produced as a result of the previous step. The main aim of this article is the segmentation of endothelial cells, which involves precise detection of the endothelial contours. So a new segmentation model was proposed such that the shape of the cells will be extracted, and the contours were highlighted. This stage is followed by clinical feature extraction and uses the features for diagnosis. In this stage, several relevant clinical features such as pleomorphism mean cell perimeter, mean cell density, mean cell area, and polymegathism are extracted. The role of these clinical features is crucial for the early detection of corneal pathologies as well as the evaluation of the health of the corneal endothelium layer. The findings of this study were promising.https://doi.org/10.1515/jisys-2021-0191trainable watershedcornea endothelial cellscornea endothelial cell segmentationcontrast-limited adaptive histogram equalisation |
| spellingShingle | Sami Ahmed Saifullah Rahim Mohd Shafry Mohd Trainable watershed-based model for cornea endothelial cell segmentation Journal of Intelligent Systems trainable watershed cornea endothelial cells cornea endothelial cell segmentation contrast-limited adaptive histogram equalisation |
| title | Trainable watershed-based model for cornea endothelial cell segmentation |
| title_full | Trainable watershed-based model for cornea endothelial cell segmentation |
| title_fullStr | Trainable watershed-based model for cornea endothelial cell segmentation |
| title_full_unstemmed | Trainable watershed-based model for cornea endothelial cell segmentation |
| title_short | Trainable watershed-based model for cornea endothelial cell segmentation |
| title_sort | trainable watershed based model for cornea endothelial cell segmentation |
| topic | trainable watershed cornea endothelial cells cornea endothelial cell segmentation contrast-limited adaptive histogram equalisation |
| url | https://doi.org/10.1515/jisys-2021-0191 |
| work_keys_str_mv | AT samiahmedsaifullah trainablewatershedbasedmodelforcorneaendothelialcellsegmentation AT rahimmohdshafrymohd trainablewatershedbasedmodelforcorneaendothelialcellsegmentation |