DArT-based evaluation of soybean germplasm from Polish Gene Bank
Abstract Objective Soybean is an important plant used for food, feed and many industrial purposes. Interest in soybean breeding is growing in Central Europe, including Poland. A very large number of soybean accessions are stored in gene banks, but less than 1% of them have been used for breeding. He...
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| Format: | Article |
| Language: | English |
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BMC
2021-08-01
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| Series: | BMC Research Notes |
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| Online Access: | https://doi.org/10.1186/s13104-021-05750-1 |
| _version_ | 1819115216103800832 |
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| author | Elzbieta Czembor Jerzy H. Czembor Radoslaw Suchecki Nathan S. Watson-Haigh |
| author_facet | Elzbieta Czembor Jerzy H. Czembor Radoslaw Suchecki Nathan S. Watson-Haigh |
| author_sort | Elzbieta Czembor |
| collection | DOAJ |
| description | Abstract Objective Soybean is an important plant used for food, feed and many industrial purposes. Interest in soybean breeding is growing in Central Europe, including Poland. A very large number of soybean accessions are stored in gene banks, but less than 1% of them have been used for breeding. Here, we present genotypic data as well as phenotypic data on plant and seed performance, including seed chlorophyll fluorescence traits, and on yield components within a collection of soybean accessions that are conserved in the Polish Gene Bank at the Plant Breeding and Acclimatization Institute-National Research Institute. Results The materials used consisted of sub-collections: 79 Polish genotypes, including old traditional cultivars, 24 Canadian, 21 American, 21 Swedish and 31 from Central and Eastern European Countries, 9 from France and 6 from Japan. In total, 9602 high quality SNPs were derived from DArTseq, a method utilising GBS technology. GWAS, performed with the BLINK model, revealed that a total of 41 significant SNPs were mapped for days to flowering, flower colour, plant height, days to pod formation, 100 seed weight, pod colour, seeds and hilum colour and steady-state chlorophyll fluorescence under light (Ft_Lss). This is the first report about the diversity of traditional old Polish soybean cultivars. |
| first_indexed | 2024-12-22T04:57:40Z |
| format | Article |
| id | doaj.art-b6211e02451f43ada88be8fefae175dc |
| institution | Directory Open Access Journal |
| issn | 1756-0500 |
| language | English |
| last_indexed | 2024-12-22T04:57:40Z |
| publishDate | 2021-08-01 |
| publisher | BMC |
| record_format | Article |
| series | BMC Research Notes |
| spelling | doaj.art-b6211e02451f43ada88be8fefae175dc2022-12-21T18:38:20ZengBMCBMC Research Notes1756-05002021-08-011411610.1186/s13104-021-05750-1DArT-based evaluation of soybean germplasm from Polish Gene BankElzbieta Czembor0Jerzy H. Czembor1Radoslaw Suchecki2Nathan S. Watson-Haigh3Plant Breeding and Acclimatization Institute–NRIPlant Breeding and Acclimatization Institute–NRICSIRO Agriculture and FoodSouth Australian Genomics Centre, SAHMRIAbstract Objective Soybean is an important plant used for food, feed and many industrial purposes. Interest in soybean breeding is growing in Central Europe, including Poland. A very large number of soybean accessions are stored in gene banks, but less than 1% of them have been used for breeding. Here, we present genotypic data as well as phenotypic data on plant and seed performance, including seed chlorophyll fluorescence traits, and on yield components within a collection of soybean accessions that are conserved in the Polish Gene Bank at the Plant Breeding and Acclimatization Institute-National Research Institute. Results The materials used consisted of sub-collections: 79 Polish genotypes, including old traditional cultivars, 24 Canadian, 21 American, 21 Swedish and 31 from Central and Eastern European Countries, 9 from France and 6 from Japan. In total, 9602 high quality SNPs were derived from DArTseq, a method utilising GBS technology. GWAS, performed with the BLINK model, revealed that a total of 41 significant SNPs were mapped for days to flowering, flower colour, plant height, days to pod formation, 100 seed weight, pod colour, seeds and hilum colour and steady-state chlorophyll fluorescence under light (Ft_Lss). This is the first report about the diversity of traditional old Polish soybean cultivars.https://doi.org/10.1186/s13104-021-05750-1Glycine maxGenetic resourcesBiodiversityGenome-wide association studyGenomic selectionGenotyping-by-sequencing |
| spellingShingle | Elzbieta Czembor Jerzy H. Czembor Radoslaw Suchecki Nathan S. Watson-Haigh DArT-based evaluation of soybean germplasm from Polish Gene Bank BMC Research Notes Glycine max Genetic resources Biodiversity Genome-wide association study Genomic selection Genotyping-by-sequencing |
| title | DArT-based evaluation of soybean germplasm from Polish Gene Bank |
| title_full | DArT-based evaluation of soybean germplasm from Polish Gene Bank |
| title_fullStr | DArT-based evaluation of soybean germplasm from Polish Gene Bank |
| title_full_unstemmed | DArT-based evaluation of soybean germplasm from Polish Gene Bank |
| title_short | DArT-based evaluation of soybean germplasm from Polish Gene Bank |
| title_sort | dart based evaluation of soybean germplasm from polish gene bank |
| topic | Glycine max Genetic resources Biodiversity Genome-wide association study Genomic selection Genotyping-by-sequencing |
| url | https://doi.org/10.1186/s13104-021-05750-1 |
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