Next-generation sequencing yields the complete chloroplast genome of C. goeringii acc. smg222 and phylogenetic analysis
Spring orchid (Cymbidium goeringii) is one of the most important species belonging to Orchidaceae owing to its aesthetic appeal, fragrant flowers and ideal characteristics for using as a houseplant. In this study, the complete chloroplast genome of Korean C. goeringii acc. smg222 was determined by I...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2018-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2018.1437812 |
| _version_ | 1797640712546680832 |
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| author | Heng Wang So-Yeon Park Ah-Rim Lee Seong-Gyu Jang Da-Eun Im Tae-Hwan Jun Joohyun Lee Jong-Wook Chung Tae-Ho Ham Soon-Wook Kwon |
| author_facet | Heng Wang So-Yeon Park Ah-Rim Lee Seong-Gyu Jang Da-Eun Im Tae-Hwan Jun Joohyun Lee Jong-Wook Chung Tae-Ho Ham Soon-Wook Kwon |
| author_sort | Heng Wang |
| collection | DOAJ |
| description | Spring orchid (Cymbidium goeringii) is one of the most important species belonging to Orchidaceae owing to its aesthetic appeal, fragrant flowers and ideal characteristics for using as a houseplant. In this study, the complete chloroplast genome of Korean C. goeringii acc. smg222 was determined by Illumina sequencing. The circular double-stranded DNA of 148,441 bp consisted of two inverted repeat regions of 25,610 bp each, a large single copy region of 83,311 bp, and a small single copy region of 13,910 bp. The genome contained 122 genes, of which 104 were unique and 18 were duplicated within the IRs. The 104 unique genes included 70 protein-coding genes, 30 distinct tRNA genes, and four rRNA genes. Phylogenetic tree analysis revealed that C. goeringii acc. smg222 was clustered with Cymbidium kanran, a cymbidium species native to Korea. |
| first_indexed | 2024-03-11T13:35:39Z |
| format | Article |
| id | doaj.art-b656b4bfb1f04bf5903501400f20c7f7 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:35:39Z |
| publishDate | 2018-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-b656b4bfb1f04bf5903501400f20c7f72023-11-02T15:57:21ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592018-01-013121521610.1080/23802359.2018.14378121437812Next-generation sequencing yields the complete chloroplast genome of C. goeringii acc. smg222 and phylogenetic analysisHeng Wang0So-Yeon Park1Ah-Rim Lee2Seong-Gyu Jang3Da-Eun Im4Tae-Hwan Jun5Joohyun Lee6Jong-Wook Chung7Tae-Ho Ham8Soon-Wook Kwon9Pusan National UniversityPusan National UniversityPusan National UniversityPusan National UniversityPusan National UniversityPusan National UniversityKonkuk UniversityChungbuk National UniversityKorea National Open UniversityPusan National UniversitySpring orchid (Cymbidium goeringii) is one of the most important species belonging to Orchidaceae owing to its aesthetic appeal, fragrant flowers and ideal characteristics for using as a houseplant. In this study, the complete chloroplast genome of Korean C. goeringii acc. smg222 was determined by Illumina sequencing. The circular double-stranded DNA of 148,441 bp consisted of two inverted repeat regions of 25,610 bp each, a large single copy region of 83,311 bp, and a small single copy region of 13,910 bp. The genome contained 122 genes, of which 104 were unique and 18 were duplicated within the IRs. The 104 unique genes included 70 protein-coding genes, 30 distinct tRNA genes, and four rRNA genes. Phylogenetic tree analysis revealed that C. goeringii acc. smg222 was clustered with Cymbidium kanran, a cymbidium species native to Korea.http://dx.doi.org/10.1080/23802359.2018.1437812cymbidium goeringii acc. smg222chloroplast genomeillumina sequencing |
| spellingShingle | Heng Wang So-Yeon Park Ah-Rim Lee Seong-Gyu Jang Da-Eun Im Tae-Hwan Jun Joohyun Lee Jong-Wook Chung Tae-Ho Ham Soon-Wook Kwon Next-generation sequencing yields the complete chloroplast genome of C. goeringii acc. smg222 and phylogenetic analysis Mitochondrial DNA. Part B. Resources cymbidium goeringii acc. smg222 chloroplast genome illumina sequencing |
| title | Next-generation sequencing yields the complete chloroplast genome of C. goeringii acc. smg222 and phylogenetic analysis |
| title_full | Next-generation sequencing yields the complete chloroplast genome of C. goeringii acc. smg222 and phylogenetic analysis |
| title_fullStr | Next-generation sequencing yields the complete chloroplast genome of C. goeringii acc. smg222 and phylogenetic analysis |
| title_full_unstemmed | Next-generation sequencing yields the complete chloroplast genome of C. goeringii acc. smg222 and phylogenetic analysis |
| title_short | Next-generation sequencing yields the complete chloroplast genome of C. goeringii acc. smg222 and phylogenetic analysis |
| title_sort | next generation sequencing yields the complete chloroplast genome of c goeringii acc smg222 and phylogenetic analysis |
| topic | cymbidium goeringii acc. smg222 chloroplast genome illumina sequencing |
| url | http://dx.doi.org/10.1080/23802359.2018.1437812 |
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