Bi-channel image registration and deep-learning segmentation (BIRDS) for efficient, versatile 3D mapping of mouse brain

Bi-channel image registration and deep-learning segmentation (BIRDS) for efficient, versatile 3D mapping of mouse brain

We have developed an open-source software called bi-channel image registration and deep-learning segmentation (BIRDS) for the mapping and analysis of 3D microscopy data and applied this to the mouse brain. The BIRDS pipeline includes image preprocessing, bi-channel registration, automatic annotation...

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Bibliographic Details
Main Authors: Xuechun Wang, Weilin Zeng, Xiaodan Yang, Yongsheng Zhang, Chunyu Fang, Shaoqun Zeng, Yunyun Han, Peng Fei
Format: Article
Language:English
Published: eLife Sciences Publications Ltd 2021-01-01
Series:eLife
Subjects:
mouse brain
deep-learning
image registration
Online Access:https://elifesciences.org/articles/63455

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