The complete chloroplast genome sequence of Rhodiola kirilowii (Crassulaceae), a precious Tibetan drug in China
Rhodiola kirilowii is a precious Tibetan drug and an extremely endangered plant. In recent years, the number of individuals of R. kirilowii has decreased sharply. Here, we determined and analyzed the complete chloroplast genome of R. kirilowii. The cpDNA was 150,905 bp in length, containing a pair o...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2020-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1667898 |
| _version_ | 1797639665317052416 |
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| author | Kaihui Zhao Yuanjiang Xu Yazhou Lu Lianqiang Li Hong Quan Zhihua Liao Xiaozhong Lan |
| author_facet | Kaihui Zhao Yuanjiang Xu Yazhou Lu Lianqiang Li Hong Quan Zhihua Liao Xiaozhong Lan |
| author_sort | Kaihui Zhao |
| collection | DOAJ |
| description | Rhodiola kirilowii is a precious Tibetan drug and an extremely endangered plant. In recent years, the number of individuals of R. kirilowii has decreased sharply. Here, we determined and analyzed the complete chloroplast genome of R. kirilowii. The cpDNA was 150,905 bp in length, containing a pair of inverted repeats (IRs) of 25,864 bp each separated by a large and small single copy (LSC and SSC) regions of 82,131 bp and 17,046 bp, respectively. The genome contained 84 protein-coding genes, 8 rRNA genes, and 36 tRNA genes. The overall GC content of the chloroplast genome was 37.8%, whereas the corresponding values of the LSC, SSC, and IR regions were 35.8, 31.7 and 42.9%, respectively. A maximum likelihood (ML) phylogenetic analysis demonstrated that Rhodiola sacra and Rhodiola crenulata were clustered into one clade with strong support values, indicating their closer relationship. |
| first_indexed | 2024-03-11T13:20:51Z |
| format | Article |
| id | doaj.art-b7a0fca27a6a4f7caae3e76d088c51f9 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:20:51Z |
| publishDate | 2020-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-b7a0fca27a6a4f7caae3e76d088c51f92023-11-03T10:28:38ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-07-01533110311110.1080/23802359.2019.16678981667898The complete chloroplast genome sequence of Rhodiola kirilowii (Crassulaceae), a precious Tibetan drug in ChinaKaihui Zhao0Yuanjiang Xu1Yazhou Lu2Lianqiang Li3Hong Quan4Zhihua Liao5Xiaozhong Lan6TAAHC-SWU Medicinal Plant Joint R&D Centre, Tibetan Collaborative Innovation Centre of Agricultural and Animal Husbandry Resources, Food Science College, Tibet Agriculture and Animal Husbandry UniversityRes. Institute of Tibet Plateau Ecology, Tibet Agriculture and Animal Husbandry UniversityTAAHC-SWU Medicinal Plant Joint R&D Centre, Tibetan Collaborative Innovation Centre of Agricultural and Animal Husbandry Resources, Food Science College, Tibet Agriculture and Animal Husbandry UniversityTAAHC-SWU Medicinal Plant Joint R&D Centre, Tibetan Collaborative Innovation Centre of Agricultural and Animal Husbandry Resources, Food Science College, Tibet Agriculture and Animal Husbandry UniversityRes. Institute of Tibet Plateau Ecology, Tibet Agriculture and Animal Husbandry UniversityTAAHC-SWU Medicinal Plant Joint R&D Centre, Tibetan Collaborative Innovation Centre of Agricultural and Animal Husbandry Resources, Food Science College, Tibet Agriculture and Animal Husbandry UniversityTAAHC-SWU Medicinal Plant Joint R&D Centre, Tibetan Collaborative Innovation Centre of Agricultural and Animal Husbandry Resources, Food Science College, Tibet Agriculture and Animal Husbandry UniversityRhodiola kirilowii is a precious Tibetan drug and an extremely endangered plant. In recent years, the number of individuals of R. kirilowii has decreased sharply. Here, we determined and analyzed the complete chloroplast genome of R. kirilowii. The cpDNA was 150,905 bp in length, containing a pair of inverted repeats (IRs) of 25,864 bp each separated by a large and small single copy (LSC and SSC) regions of 82,131 bp and 17,046 bp, respectively. The genome contained 84 protein-coding genes, 8 rRNA genes, and 36 tRNA genes. The overall GC content of the chloroplast genome was 37.8%, whereas the corresponding values of the LSC, SSC, and IR regions were 35.8, 31.7 and 42.9%, respectively. A maximum likelihood (ML) phylogenetic analysis demonstrated that Rhodiola sacra and Rhodiola crenulata were clustered into one clade with strong support values, indicating their closer relationship.http://dx.doi.org/10.1080/23802359.2019.1667898rhodiola kirilowiichloroplast genomephylogenetic analysis |
| spellingShingle | Kaihui Zhao Yuanjiang Xu Yazhou Lu Lianqiang Li Hong Quan Zhihua Liao Xiaozhong Lan The complete chloroplast genome sequence of Rhodiola kirilowii (Crassulaceae), a precious Tibetan drug in China Mitochondrial DNA. Part B. Resources rhodiola kirilowii chloroplast genome phylogenetic analysis |
| title | The complete chloroplast genome sequence of Rhodiola kirilowii (Crassulaceae), a precious Tibetan drug in China |
| title_full | The complete chloroplast genome sequence of Rhodiola kirilowii (Crassulaceae), a precious Tibetan drug in China |
| title_fullStr | The complete chloroplast genome sequence of Rhodiola kirilowii (Crassulaceae), a precious Tibetan drug in China |
| title_full_unstemmed | The complete chloroplast genome sequence of Rhodiola kirilowii (Crassulaceae), a precious Tibetan drug in China |
| title_short | The complete chloroplast genome sequence of Rhodiola kirilowii (Crassulaceae), a precious Tibetan drug in China |
| title_sort | complete chloroplast genome sequence of rhodiola kirilowii crassulaceae a precious tibetan drug in china |
| topic | rhodiola kirilowii chloroplast genome phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2019.1667898 |
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