Differential methylation analysis of reduced representation bisulfite sequencing experiments using edgeR [version 1; referees: 2 approved, 1 approved with reservations]
Studies in epigenetics have shown that DNA methylation is a key factor in regulating gene expression. Aberrant DNA methylation is often associated with DNA instability, which could lead to development of diseases such as cancer. DNA methylation typically occurs in CpG context. When located in a gene...
Main Authors: | Yunshun Chen, Bhupinder Pal, Jane E. Visvader, Gordon K. Smyth |
---|---|
Format: | Article |
Language: | English |
Published: |
F1000 Research Ltd
2017-11-01
|
Series: | F1000Research |
Subjects: | |
Online Access: | https://f1000research.com/articles/6-2055/v1 |
Similar Items
-
Differential methylation analysis of reduced representation bisulfite sequencing experiments using edgeR [version 2; referees: 2 approved, 1 approved with reservations]
by: Yunshun Chen, et al.
Published: (2018-10-01) -
RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR [version 1; referees: 3 approved]
by: Charity W. Law, et al.
Published: (2016-06-01) -
RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR [version 2; referees: 3 approved]
by: Charity W. Law, et al.
Published: (2016-11-01) -
RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR [version 3; referees: 3 approved]
by: Charity W. Law, et al.
Published: (2018-12-01) -
BAT: Bisulfite Analysis Toolkit [version 1; referees: 2 approved]
by: Helene Kretzmer, et al.
Published: (2017-08-01)