Characterization of the complete chloroplast genome of leek Allium porrum L. (Amaryllidaceae)
The complete chloroplast genome sequence of Allium porrum was determined by Illumina single-end sequencing. The complete plastid genome was 152,732 bp in length containing a large single copy (LSC) of 81,744 bp and a small single copy (SSC) of 17,910 bp, which were separated by a pair of 26,524 bp i...
| Main Authors: | , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Taylor & Francis Group
2019-07-01
|
| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1640090 |
| _version_ | 1827773357473398784 |
|---|---|
| author | Mikhail A. Filyushin Alexey V. Beletsky Elena Z. Kochieva |
| author_facet | Mikhail A. Filyushin Alexey V. Beletsky Elena Z. Kochieva |
| author_sort | Mikhail A. Filyushin |
| collection | DOAJ |
| description | The complete chloroplast genome sequence of Allium porrum was determined by Illumina single-end sequencing. The complete plastid genome was 152,732 bp in length containing a large single copy (LSC) of 81,744 bp and a small single copy (SSC) of 17,910 bp, which were separated by a pair of 26,524 bp inverted repeats (IRs). A total of 133 genes were annotated, including 80 protein-coding genes, 38 tRNA genes, 8 rRNA genes, and 7 pseudogenes. The overall GC contents of the plastid genome were 36.7%. Unlike A. sativum and A. obliquum in the leek, plastome infA gene is absent, and rpl23 gene is a pseudogene due to a 4 bp deletion and the formation of a premature stop codon. |
| first_indexed | 2024-03-11T13:21:51Z |
| format | Article |
| id | doaj.art-b8f9af95a0c844a0b6cca50d7b963365 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:21:51Z |
| publishDate | 2019-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-b8f9af95a0c844a0b6cca50d7b9633652023-11-03T10:28:35ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-07-01422602260310.1080/23802359.2019.16400901640090Characterization of the complete chloroplast genome of leek Allium porrum L. (Amaryllidaceae)Mikhail A. Filyushin0Alexey V. Beletsky1Elena Z. Kochieva2Research Center of Biotechnology of the Russian Academy of SciencesResearch Center of Biotechnology of the Russian Academy of SciencesResearch Center of Biotechnology of the Russian Academy of SciencesThe complete chloroplast genome sequence of Allium porrum was determined by Illumina single-end sequencing. The complete plastid genome was 152,732 bp in length containing a large single copy (LSC) of 81,744 bp and a small single copy (SSC) of 17,910 bp, which were separated by a pair of 26,524 bp inverted repeats (IRs). A total of 133 genes were annotated, including 80 protein-coding genes, 38 tRNA genes, 8 rRNA genes, and 7 pseudogenes. The overall GC contents of the plastid genome were 36.7%. Unlike A. sativum and A. obliquum in the leek, plastome infA gene is absent, and rpl23 gene is a pseudogene due to a 4 bp deletion and the formation of a premature stop codon.http://dx.doi.org/10.1080/23802359.2019.1640090allium porrumleekchloroplast genome |
| spellingShingle | Mikhail A. Filyushin Alexey V. Beletsky Elena Z. Kochieva Characterization of the complete chloroplast genome of leek Allium porrum L. (Amaryllidaceae) Mitochondrial DNA. Part B. Resources allium porrum leek chloroplast genome |
| title | Characterization of the complete chloroplast genome of leek Allium porrum L. (Amaryllidaceae) |
| title_full | Characterization of the complete chloroplast genome of leek Allium porrum L. (Amaryllidaceae) |
| title_fullStr | Characterization of the complete chloroplast genome of leek Allium porrum L. (Amaryllidaceae) |
| title_full_unstemmed | Characterization of the complete chloroplast genome of leek Allium porrum L. (Amaryllidaceae) |
| title_short | Characterization of the complete chloroplast genome of leek Allium porrum L. (Amaryllidaceae) |
| title_sort | characterization of the complete chloroplast genome of leek allium porrum l amaryllidaceae |
| topic | allium porrum leek chloroplast genome |
| url | http://dx.doi.org/10.1080/23802359.2019.1640090 |
| work_keys_str_mv | AT mikhailafilyushin characterizationofthecompletechloroplastgenomeofleekalliumporrumlamaryllidaceae AT alexeyvbeletsky characterizationofthecompletechloroplastgenomeofleekalliumporrumlamaryllidaceae AT elenazkochieva characterizationofthecompletechloroplastgenomeofleekalliumporrumlamaryllidaceae |