Full-length transcriptome profiling for fruit development in Diospyros oleifera using nanopore sequencing
Abstract Objectives Diospyros oleifera, one of the most economically important Diospyros species, is an ideal model for studying the fruit development of persimmon. While, the lack of whole-transcriptome has hindered the complex transcriptional regulation mechanisms of sugar and tannin during fruit...
| Main Authors: | , , , , |
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| Format: | Article |
| Language: | English |
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BMC
2023-03-01
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| Series: | BMC Genomic Data |
| Subjects: | |
| Online Access: | https://doi.org/10.1186/s12863-023-01105-w |
| _version_ | 1827982592726532096 |
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| author | Yang Xu Cui-yu Liu Wen-qiang Cheng Kai-yun Wu Bang-chu Gong |
| author_facet | Yang Xu Cui-yu Liu Wen-qiang Cheng Kai-yun Wu Bang-chu Gong |
| author_sort | Yang Xu |
| collection | DOAJ |
| description | Abstract Objectives Diospyros oleifera, one of the most economically important Diospyros species, is an ideal model for studying the fruit development of persimmon. While, the lack of whole-transcriptome has hindered the complex transcriptional regulation mechanisms of sugar and tannin during fruit development. Data description We applied Oxford Nanopore Technologies to six developmental stage of fruit from D. oleifera for use in transcriptome sequencing. As a result of full-length transcriptome sequencing, 55.87 Gb of clean data were generated. After mapping onto the reference genome of D. oleifera, 51,588 full-length collapsing transcripts, including 2,727 new gene loci and 43,223 transcripts, were obtained. Comprehensively annotated, 38,086 of new transcripts were functional annotation, and 972 lncRNAs, 7,159 AS events were predicted. Here, we released the transcriptome database of D. oleifera at different stage of fruit development,which will provide a fundamention of to investigatethe transcript structure, variants and evolution of persimmon. |
| first_indexed | 2024-04-09T22:35:20Z |
| format | Article |
| id | doaj.art-b9150add81e04dc19c2851d9da15d076 |
| institution | Directory Open Access Journal |
| issn | 2730-6844 |
| language | English |
| last_indexed | 2024-04-09T22:35:20Z |
| publishDate | 2023-03-01 |
| publisher | BMC |
| record_format | Article |
| series | BMC Genomic Data |
| spelling | doaj.art-b9150add81e04dc19c2851d9da15d0762023-03-22T12:31:18ZengBMCBMC Genomic Data2730-68442023-03-012411510.1186/s12863-023-01105-wFull-length transcriptome profiling for fruit development in Diospyros oleifera using nanopore sequencingYang Xu0Cui-yu Liu1Wen-qiang Cheng2Kai-yun Wu3Bang-chu Gong4Research Institute of Subtropical Forestry, Chinese Academy of ForestryResearch Institute of Subtropical Forestry, Chinese Academy of ForestryResearch Institute of Subtropical Forestry, Chinese Academy of ForestryResearch Institute of Subtropical Forestry, Chinese Academy of ForestryResearch Institute of Subtropical Forestry, Chinese Academy of ForestryAbstract Objectives Diospyros oleifera, one of the most economically important Diospyros species, is an ideal model for studying the fruit development of persimmon. While, the lack of whole-transcriptome has hindered the complex transcriptional regulation mechanisms of sugar and tannin during fruit development. Data description We applied Oxford Nanopore Technologies to six developmental stage of fruit from D. oleifera for use in transcriptome sequencing. As a result of full-length transcriptome sequencing, 55.87 Gb of clean data were generated. After mapping onto the reference genome of D. oleifera, 51,588 full-length collapsing transcripts, including 2,727 new gene loci and 43,223 transcripts, were obtained. Comprehensively annotated, 38,086 of new transcripts were functional annotation, and 972 lncRNAs, 7,159 AS events were predicted. Here, we released the transcriptome database of D. oleifera at different stage of fruit development,which will provide a fundamention of to investigatethe transcript structure, variants and evolution of persimmon.https://doi.org/10.1186/s12863-023-01105-wDiospyros oleiferaFruit developmentNanopore sequencingFull-length transcriptome |
| spellingShingle | Yang Xu Cui-yu Liu Wen-qiang Cheng Kai-yun Wu Bang-chu Gong Full-length transcriptome profiling for fruit development in Diospyros oleifera using nanopore sequencing BMC Genomic Data Diospyros oleifera Fruit development Nanopore sequencing Full-length transcriptome |
| title | Full-length transcriptome profiling for fruit development in Diospyros oleifera using nanopore sequencing |
| title_full | Full-length transcriptome profiling for fruit development in Diospyros oleifera using nanopore sequencing |
| title_fullStr | Full-length transcriptome profiling for fruit development in Diospyros oleifera using nanopore sequencing |
| title_full_unstemmed | Full-length transcriptome profiling for fruit development in Diospyros oleifera using nanopore sequencing |
| title_short | Full-length transcriptome profiling for fruit development in Diospyros oleifera using nanopore sequencing |
| title_sort | full length transcriptome profiling for fruit development in diospyros oleifera using nanopore sequencing |
| topic | Diospyros oleifera Fruit development Nanopore sequencing Full-length transcriptome |
| url | https://doi.org/10.1186/s12863-023-01105-w |
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