Global evolution and expression analysis of BTB-containing ankyrin repeat genes in plants
The ankyrin (ANK) repeat domain and bric-a-brac, tram-track, broad complex (BTB) domains, which are the most common protein motifs in eukaryotic proteins, regulate diverse developmental and biological processes in plants. In this study, 230 BTB-containing ANK (ANK-BTB) homologs were identified and c...
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| Format: | Article |
| Language: | English |
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University of Belgrade, University of Novi Sad
2018-01-01
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| Series: | Archives of Biological Sciences |
| Subjects: | |
| Online Access: | http://www.doiserbia.nb.rs/img/doi/0354-4664/2018/0354-46641700042G.pdf |
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| author | Guan Peiyan Sun Lixue Yang Rui Gao Huiyang Liu Pu Zheng Chengchao Zhang Shizhong |
| author_facet | Guan Peiyan Sun Lixue Yang Rui Gao Huiyang Liu Pu Zheng Chengchao Zhang Shizhong |
| author_sort | Guan Peiyan |
| collection | DOAJ |
| description | The ankyrin (ANK) repeat domain and bric-a-brac, tram-track, broad complex (BTB) domains, which are the most common protein motifs in eukaryotic proteins, regulate diverse developmental and biological processes in plants. In this study, 230 BTB-containing ANK (ANK-BTB) homologs were identified and categorized into two groups (class I and class II) in plants. Phylogenetic and comparative analysis found that ANK-BTB genes originated in bryophytes and ferns and their number expanded by segment duplications. All of the selected ANK-BTB genes were expressed in two or more tested tissues, indicating that these genes are involved in various aspects of developmental processes in Arabidopsis. Furthermore, the ANK-BTB genes responded to abiotic stresses (NaCl, mannitol, heat and cold) and ABA treatments. To our knowledge, this study is the first report of a genome-wide analysis of ANK-BTB genes. This study also provides valuable information to understand the classification, evolution and putative functions of the gene family. |
| first_indexed | 2024-12-11T23:08:12Z |
| format | Article |
| id | doaj.art-b98cbdf3185f4494b700aaa64cec065d |
| institution | Directory Open Access Journal |
| issn | 0354-4664 1821-4339 |
| language | English |
| last_indexed | 2024-12-11T23:08:12Z |
| publishDate | 2018-01-01 |
| publisher | University of Belgrade, University of Novi Sad |
| record_format | Article |
| series | Archives of Biological Sciences |
| spelling | doaj.art-b98cbdf3185f4494b700aaa64cec065d2022-12-22T00:46:51ZengUniversity of Belgrade, University of Novi SadArchives of Biological Sciences0354-46641821-43392018-01-0170224925810.2298/ABS170306042G0354-46641700042GGlobal evolution and expression analysis of BTB-containing ankyrin repeat genes in plantsGuan Peiyan0Sun Lixue1Yang Rui2Gao Huiyang3Liu Pu4Zheng Chengchao5Zhang Shizhong6Shandong Agricultural University, State Key Laboratory of Crop Biology, Tai’an, Shandong Province, P.R. ChinaShandong Agricultural University, State Key Laboratory of Crop Biology, Tai’an, Shandong Province, P.R. ChinaShandong Agricultural University, State Key Laboratory of Crop Biology, Tai’an, Shandong Province, P.R. ChinaShandong Agricultural University, State Key Laboratory of Crop Biology, Tai’an, Shandong Province, P.R. ChinaShandong Agricultural University, State Key Laboratory of Crop Biology, Tai’an, Shandong Province, P.R. ChinaShandong Agricultural University, State Key Laboratory of Crop Biology, Tai’an, Shandong Province, P.R. ChinaShandong Agricultural University, State Key Laboratory of Crop Biology, Tai’an, Shandong Province, P.R. ChinaThe ankyrin (ANK) repeat domain and bric-a-brac, tram-track, broad complex (BTB) domains, which are the most common protein motifs in eukaryotic proteins, regulate diverse developmental and biological processes in plants. In this study, 230 BTB-containing ANK (ANK-BTB) homologs were identified and categorized into two groups (class I and class II) in plants. Phylogenetic and comparative analysis found that ANK-BTB genes originated in bryophytes and ferns and their number expanded by segment duplications. All of the selected ANK-BTB genes were expressed in two or more tested tissues, indicating that these genes are involved in various aspects of developmental processes in Arabidopsis. Furthermore, the ANK-BTB genes responded to abiotic stresses (NaCl, mannitol, heat and cold) and ABA treatments. To our knowledge, this study is the first report of a genome-wide analysis of ANK-BTB genes. This study also provides valuable information to understand the classification, evolution and putative functions of the gene family.http://www.doiserbia.nb.rs/img/doi/0354-4664/2018/0354-46641700042G.pdfANKBTBbioinformaticsexpression patternabiotic stressevolution |
| spellingShingle | Guan Peiyan Sun Lixue Yang Rui Gao Huiyang Liu Pu Zheng Chengchao Zhang Shizhong Global evolution and expression analysis of BTB-containing ankyrin repeat genes in plants Archives of Biological Sciences ANK BTB bioinformatics expression pattern abiotic stress evolution |
| title | Global evolution and expression analysis of BTB-containing ankyrin repeat genes in plants |
| title_full | Global evolution and expression analysis of BTB-containing ankyrin repeat genes in plants |
| title_fullStr | Global evolution and expression analysis of BTB-containing ankyrin repeat genes in plants |
| title_full_unstemmed | Global evolution and expression analysis of BTB-containing ankyrin repeat genes in plants |
| title_short | Global evolution and expression analysis of BTB-containing ankyrin repeat genes in plants |
| title_sort | global evolution and expression analysis of btb containing ankyrin repeat genes in plants |
| topic | ANK BTB bioinformatics expression pattern abiotic stress evolution |
| url | http://www.doiserbia.nb.rs/img/doi/0354-4664/2018/0354-46641700042G.pdf |
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