Self-subdiffusion in solutions of star-shaped crowders: non-monotonic effects of inter-particle interactions

We examine by extensive computer simulations the self-diffusion of anisotropic star-like particles in crowded two-dimensional solutions. We investigate the implications of the area coverage fraction ϕ of the crowders and the crowder–crowder adhesion properties on the regime of transient anomalous di...

Full description

Bibliographic Details
Main Authors: Jaeoh Shin, Andrey G Cherstvy, Ralf Metzler
Format: Article
Language:English
Published: IOP Publishing 2015-01-01
Series:New Journal of Physics
Subjects:
Online Access:https://doi.org/10.1088/1367-2630/17/11/113028
Description
Summary:We examine by extensive computer simulations the self-diffusion of anisotropic star-like particles in crowded two-dimensional solutions. We investigate the implications of the area coverage fraction ϕ of the crowders and the crowder–crowder adhesion properties on the regime of transient anomalous diffusion. We systematically compute the mean squared displacement (MSD) of the particles, their time averaged MSD, and the effective diffusion coefficient. The diffusion is ergodic in the limit of long traces, such that the mean time averaged MSD converges towards the ensemble averaged MSD, and features a small residual amplitude spread of the time averaged MSD from individual trajectories. At intermediate time scales, we quantify the anomalous diffusion in the system. Also, we show that the translational—but not rotational—diffusivity of the particles D is a nonmonotonic function of the attraction strength between them. Both diffusion coefficients decrease as the power law $D(\phi )\sim {(1-\phi /{\phi }^{\star })}^{2...2.4}$ with the area fraction ϕ occupied by the crowders and the critical value ${\phi }^{\star }.$ Our results might be applicable to rationalising the experimental observations of non-Brownian diffusion for a number of standard macromolecular crowders used in vitro to mimic the cytoplasmic conditions of living cells.
ISSN:1367-2630