Simple sequence repeats drive genome plasticity and promote adaptive evolution in penaeid shrimp
This study focuses on the role of simple sequence repeats (SSRs) in the evolution of the genomes of two penaeid shrimp species, Fenneropenaeus chinensis and Litopenaeus vannamei. They observed a significant expansion in SSRs in the genomes of these species (~23%) compared what is seen in other anima...
| Main Authors: | , , , , , , , , , , , , , , , |
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| Format: | Article |
| Language: | English |
| Published: |
Nature Portfolio
2021-02-01
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| Series: | Communications Biology |
| Online Access: | https://doi.org/10.1038/s42003-021-01716-y |
| _version_ | 1818431878979387392 |
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| author | Jianbo Yuan Xiaojun Zhang Min Wang Yamin Sun Chengzhang Liu Shihao Li Yang Yu Yi Gao Fei Liu Xiaoxi Zhang Jie Kong Guangyi Fan Chengsong Zhang Lu Feng Jianhai Xiang Fuhua Li |
| author_facet | Jianbo Yuan Xiaojun Zhang Min Wang Yamin Sun Chengzhang Liu Shihao Li Yang Yu Yi Gao Fei Liu Xiaoxi Zhang Jie Kong Guangyi Fan Chengsong Zhang Lu Feng Jianhai Xiang Fuhua Li |
| author_sort | Jianbo Yuan |
| collection | DOAJ |
| description | This study focuses on the role of simple sequence repeats (SSRs) in the evolution of the genomes of two penaeid shrimp species, Fenneropenaeus chinensis and Litopenaeus vannamei. They observed a significant expansion in SSRs in the genomes of these species (~23%) compared what is seen in other animal genomes (~1%) and suggest a possible mechanistic relationship between SSRs and transposable elements. |
| first_indexed | 2024-12-14T15:56:19Z |
| format | Article |
| id | doaj.art-bb2cb84ec33848af905d4031ccc060a2 |
| institution | Directory Open Access Journal |
| issn | 2399-3642 |
| language | English |
| last_indexed | 2024-12-14T15:56:19Z |
| publishDate | 2021-02-01 |
| publisher | Nature Portfolio |
| record_format | Article |
| series | Communications Biology |
| spelling | doaj.art-bb2cb84ec33848af905d4031ccc060a22022-12-21T22:55:15ZengNature PortfolioCommunications Biology2399-36422021-02-014111410.1038/s42003-021-01716-ySimple sequence repeats drive genome plasticity and promote adaptive evolution in penaeid shrimpJianbo Yuan0Xiaojun Zhang1Min Wang2Yamin Sun3Chengzhang Liu4Shihao Li5Yang Yu6Yi Gao7Fei Liu8Xiaoxi Zhang9Jie Kong10Guangyi Fan11Chengsong Zhang12Lu Feng13Jianhai Xiang14Fuhua Li15CAS Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of SciencesCAS Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of SciencesThe Key Laboratory of Molecular Microbiology and Technology, Ministry of EducationTianjin Biochip CorporationCAS Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of SciencesCAS Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of SciencesCAS Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of SciencesCAS Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of SciencesCAS Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of SciencesCAS Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of SciencesKey Laboratory for Sustainable Utilization of Marine Fisheries Resources of Ministry of Agriculture, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery SciencesBGI-Qingdao, BGI-ShenzhenCAS Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of SciencesThe Key Laboratory of Molecular Microbiology and Technology, Ministry of EducationCAS Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of SciencesCAS Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of SciencesThis study focuses on the role of simple sequence repeats (SSRs) in the evolution of the genomes of two penaeid shrimp species, Fenneropenaeus chinensis and Litopenaeus vannamei. They observed a significant expansion in SSRs in the genomes of these species (~23%) compared what is seen in other animal genomes (~1%) and suggest a possible mechanistic relationship between SSRs and transposable elements.https://doi.org/10.1038/s42003-021-01716-y |
| spellingShingle | Jianbo Yuan Xiaojun Zhang Min Wang Yamin Sun Chengzhang Liu Shihao Li Yang Yu Yi Gao Fei Liu Xiaoxi Zhang Jie Kong Guangyi Fan Chengsong Zhang Lu Feng Jianhai Xiang Fuhua Li Simple sequence repeats drive genome plasticity and promote adaptive evolution in penaeid shrimp Communications Biology |
| title | Simple sequence repeats drive genome plasticity and promote adaptive evolution in penaeid shrimp |
| title_full | Simple sequence repeats drive genome plasticity and promote adaptive evolution in penaeid shrimp |
| title_fullStr | Simple sequence repeats drive genome plasticity and promote adaptive evolution in penaeid shrimp |
| title_full_unstemmed | Simple sequence repeats drive genome plasticity and promote adaptive evolution in penaeid shrimp |
| title_short | Simple sequence repeats drive genome plasticity and promote adaptive evolution in penaeid shrimp |
| title_sort | simple sequence repeats drive genome plasticity and promote adaptive evolution in penaeid shrimp |
| url | https://doi.org/10.1038/s42003-021-01716-y |
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