PathJam: a new service for integrating biological pathway information
Biological pathways are crucial to much of the scientific research today including the study of specific biological processes related with human diseases. PathJam is a new comprehensive and freely accessible web-server application integrating scattered human pathway annotation from several public so...
| Main Authors: | , , , , , |
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| Format: | Article |
| Language: | English |
| Published: |
De Gruyter
2010-03-01
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| Series: | Journal of Integrative Bioinformatics |
| Online Access: | https://doi.org/10.2390/biecoll-jib-2010-147 |
| _version_ | 1819293282571649024 |
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| author | Glez-Peña Daniel Reboiro-Jato Miguel Domínguez Rubén Gómez-López Gonzalo Pisano David G. Fdez-Riverola Florentino |
| author_facet | Glez-Peña Daniel Reboiro-Jato Miguel Domínguez Rubén Gómez-López Gonzalo Pisano David G. Fdez-Riverola Florentino |
| author_sort | Glez-Peña Daniel |
| collection | DOAJ |
| description | Biological pathways are crucial to much of the scientific research today including the study of specific biological processes related with human diseases. PathJam is a new comprehensive and freely accessible web-server application integrating scattered human pathway annotation from several public sources. The tool has been designed for both (i) being intuitive for wet-lab users providing statistical enrichment analysis of pathway annotations and (ii) giving support to the development of new integrative pathway applications. PathJam’s unique features and advantages include interactive graphs linking pathways and genes of interest, downloadable results in fully compatible formats, GSEA compatible output files and a standardized RESTful API. |
| first_indexed | 2024-12-24T04:07:57Z |
| format | Article |
| id | doaj.art-bb2d2161a564422ca3a8e16e2d07fc39 |
| institution | Directory Open Access Journal |
| issn | 1613-4516 |
| language | English |
| last_indexed | 2024-12-24T04:07:57Z |
| publishDate | 2010-03-01 |
| publisher | De Gruyter |
| record_format | Article |
| series | Journal of Integrative Bioinformatics |
| spelling | doaj.art-bb2d2161a564422ca3a8e16e2d07fc392022-12-21T17:16:08ZengDe GruyterJournal of Integrative Bioinformatics1613-45162010-03-01719711310.2390/biecoll-jib-2010-147PathJam: a new service for integrating biological pathway informationGlez-Peña Daniel0Reboiro-Jato Miguel1Domínguez Rubén2Gómez-López Gonzalo3Pisano David G.4Fdez-Riverola Florentino5Escuela Superior de Ingeniería Informática University of Vigo, Edificio Politécnico, Campus Universitario As Lagoas s/n, 32004 Ourense, SpainEscuela Superior de Ingeniería Informática University of Vigo, Edificio Politécnico, Campus Universitario As Lagoas s/n, 32004 Ourense, SpainInformatics Unit, Complexo Hospitalario de Ourense, C/ Ramón Puga 54, 32005, Ourense, SpainUnidad de Bioinformática (UBio), Programa de Biología Estructural y Biocomputación, Centro Nacional de Investigaciones Oncológicas (CNIO), C/ Melchor Fernández Almagro 3, 28029, Madrid, Spain Unidad de Bioinformática (UBio), Programa de Biología Estructural y Biocomputación, Centro Nacional de Investigaciones Oncológicas (CNIO), C/ Melchor Fernández Almagro 3, 28029, Madrid, SpainEscuela Superior de Ingeniería Informática University of Vigo, Edificio Politécnico, Campus Universitario As Lagoas s/n, 32004 Ourense, SpainBiological pathways are crucial to much of the scientific research today including the study of specific biological processes related with human diseases. PathJam is a new comprehensive and freely accessible web-server application integrating scattered human pathway annotation from several public sources. The tool has been designed for both (i) being intuitive for wet-lab users providing statistical enrichment analysis of pathway annotations and (ii) giving support to the development of new integrative pathway applications. PathJam’s unique features and advantages include interactive graphs linking pathways and genes of interest, downloadable results in fully compatible formats, GSEA compatible output files and a standardized RESTful API.https://doi.org/10.2390/biecoll-jib-2010-147 |
| spellingShingle | Glez-Peña Daniel Reboiro-Jato Miguel Domínguez Rubén Gómez-López Gonzalo Pisano David G. Fdez-Riverola Florentino PathJam: a new service for integrating biological pathway information Journal of Integrative Bioinformatics |
| title | PathJam: a new service for integrating biological pathway information |
| title_full | PathJam: a new service for integrating biological pathway information |
| title_fullStr | PathJam: a new service for integrating biological pathway information |
| title_full_unstemmed | PathJam: a new service for integrating biological pathway information |
| title_short | PathJam: a new service for integrating biological pathway information |
| title_sort | pathjam a new service for integrating biological pathway information |
| url | https://doi.org/10.2390/biecoll-jib-2010-147 |
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