The complete mitochondrial genome of Amyda cartilaginea (Testudines: Trionychidae)
The Asiatic softshell turtle, also known as the black-rayed softshell turtle (Amyda cartilaginea; Accession no: MT039230), is found in northeastern India (Mizoram), Brunei Darussalam, Indonesia, Malaysia, Singapore, Myanmar, Laos, Vietnam, Cambodia, and Thailand. This turtle is thought to have been...
| Main Authors: | , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2020-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2020.1832595 |
| _version_ | 1827772715059118080 |
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| author | Lin Cui Dingqi Rao Mingwang Zhang |
| author_facet | Lin Cui Dingqi Rao Mingwang Zhang |
| author_sort | Lin Cui |
| collection | DOAJ |
| description | The Asiatic softshell turtle, also known as the black-rayed softshell turtle (Amyda cartilaginea; Accession no: MT039230), is found in northeastern India (Mizoram), Brunei Darussalam, Indonesia, Malaysia, Singapore, Myanmar, Laos, Vietnam, Cambodia, and Thailand. This turtle is thought to have been introduced into the Sunda Islands, Sulawesi, and Yunnan, China, through the Malay Peninsula to Sumatra, Java, and Borneo. Herein, we determined the complete mitochondrial genome of A. cartilaginea for the first time using next-generation sequencing (NGS). The assembled mitogenome was 16,763 bp in length and encoded 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, two ribosomal RNA genes (12S rRNA and 16S rRNA), and one control region (CR). The PCGs based maximum-likelihood phylogeny discriminated A. cartilaginea from other Testudines and clusters within family Trionychidae with the sister taxa of Nilssonia nigricans. |
| first_indexed | 2024-03-11T13:11:57Z |
| format | Article |
| id | doaj.art-bc7ef939072243fab7caf691daa18e69 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:11:57Z |
| publishDate | 2020-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-bc7ef939072243fab7caf691daa18e692023-11-03T14:08:16ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-07-01533652365410.1080/23802359.2020.18325951832595The complete mitochondrial genome of Amyda cartilaginea (Testudines: Trionychidae)Lin Cui0Dingqi Rao1Mingwang Zhang2College of Animal Science and Technology, Sichuan Agricultural UniversityState Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of SciencesCollege of Animal Science and Technology, Sichuan Agricultural UniversityThe Asiatic softshell turtle, also known as the black-rayed softshell turtle (Amyda cartilaginea; Accession no: MT039230), is found in northeastern India (Mizoram), Brunei Darussalam, Indonesia, Malaysia, Singapore, Myanmar, Laos, Vietnam, Cambodia, and Thailand. This turtle is thought to have been introduced into the Sunda Islands, Sulawesi, and Yunnan, China, through the Malay Peninsula to Sumatra, Java, and Borneo. Herein, we determined the complete mitochondrial genome of A. cartilaginea for the first time using next-generation sequencing (NGS). The assembled mitogenome was 16,763 bp in length and encoded 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, two ribosomal RNA genes (12S rRNA and 16S rRNA), and one control region (CR). The PCGs based maximum-likelihood phylogeny discriminated A. cartilaginea from other Testudines and clusters within family Trionychidae with the sister taxa of Nilssonia nigricans.http://dx.doi.org/10.1080/23802359.2020.1832595amyda cartilagineatrionychidaemitogenomenext-generation sequencingphylogenetic relationship |
| spellingShingle | Lin Cui Dingqi Rao Mingwang Zhang The complete mitochondrial genome of Amyda cartilaginea (Testudines: Trionychidae) Mitochondrial DNA. Part B. Resources amyda cartilaginea trionychidae mitogenome next-generation sequencing phylogenetic relationship |
| title | The complete mitochondrial genome of Amyda cartilaginea (Testudines: Trionychidae) |
| title_full | The complete mitochondrial genome of Amyda cartilaginea (Testudines: Trionychidae) |
| title_fullStr | The complete mitochondrial genome of Amyda cartilaginea (Testudines: Trionychidae) |
| title_full_unstemmed | The complete mitochondrial genome of Amyda cartilaginea (Testudines: Trionychidae) |
| title_short | The complete mitochondrial genome of Amyda cartilaginea (Testudines: Trionychidae) |
| title_sort | complete mitochondrial genome of amyda cartilaginea testudines trionychidae |
| topic | amyda cartilaginea trionychidae mitogenome next-generation sequencing phylogenetic relationship |
| url | http://dx.doi.org/10.1080/23802359.2020.1832595 |
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