Primers and probe design and precision assessment of the real time RT-PCR assay in Coxsackievirus A10 and enterovirus detection
This data article contains data related to the research article entitled “Rapid detection of enterovirus and Coxsackievirus A10 by a TaqMan based duplex one-step real time RT-PCR assay” (Chen at al., 2017) [1]. Primers and probe sequence design are among the most critical factors in real-time polyme...
| Main Authors: | , , , , , , |
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| Format: | Article |
| Language: | English |
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Elsevier
2017-06-01
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| Series: | Data in Brief |
| Subjects: | |
| Online Access: | http://www.sciencedirect.com/science/article/pii/S2352340917301671 |
| _version_ | 1828835671927685120 |
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| author | Jingfang Chen Rusheng Zhang Xinhua Ou Dong Yao Zheng Huang Linzhi Li Biancheng Sun |
| author_facet | Jingfang Chen Rusheng Zhang Xinhua Ou Dong Yao Zheng Huang Linzhi Li Biancheng Sun |
| author_sort | Jingfang Chen |
| collection | DOAJ |
| description | This data article contains data related to the research article entitled “Rapid detection of enterovirus and Coxsackievirus A10 by a TaqMan based duplex one-step real time RT-PCR assay” (Chen at al., 2017) [1]. Primers and probe sequence design are among the most critical factors in real-time polymerase chain reaction (PCR) assay optimization. Linearity, sensitivity, specificity and precision are the crucial criteria which are used to evaluate the performance of a new method. This data article report the primers and probe design and precision assessment of the new assay. VP1 gene of Coxsackievirus A10 (CV-A10) and 5′-NCR of different enterovirus (EV) serotypes were retrieved from GenBank database and aligned. The intra- and inter-assay variation were assessed using high, medium and low concentration of control plasmid DNA and viral RNA samples. |
| first_indexed | 2024-12-12T18:07:27Z |
| format | Article |
| id | doaj.art-bd2dcaa2abda44699ace809c25abf4f7 |
| institution | Directory Open Access Journal |
| issn | 2352-3409 |
| language | English |
| last_indexed | 2024-12-12T18:07:27Z |
| publishDate | 2017-06-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Data in Brief |
| spelling | doaj.art-bd2dcaa2abda44699ace809c25abf4f72022-12-22T00:16:28ZengElsevierData in Brief2352-34092017-06-0112C41842210.1016/j.dib.2017.04.035Primers and probe design and precision assessment of the real time RT-PCR assay in Coxsackievirus A10 and enterovirus detectionJingfang ChenRusheng ZhangXinhua OuDong YaoZheng HuangLinzhi LiBiancheng SunThis data article contains data related to the research article entitled “Rapid detection of enterovirus and Coxsackievirus A10 by a TaqMan based duplex one-step real time RT-PCR assay” (Chen at al., 2017) [1]. Primers and probe sequence design are among the most critical factors in real-time polymerase chain reaction (PCR) assay optimization. Linearity, sensitivity, specificity and precision are the crucial criteria which are used to evaluate the performance of a new method. This data article report the primers and probe design and precision assessment of the new assay. VP1 gene of Coxsackievirus A10 (CV-A10) and 5′-NCR of different enterovirus (EV) serotypes were retrieved from GenBank database and aligned. The intra- and inter-assay variation were assessed using high, medium and low concentration of control plasmid DNA and viral RNA samples.http://www.sciencedirect.com/science/article/pii/S2352340917301671Real time RT-PCRCoxsackievirus A10Enterovirus |
| spellingShingle | Jingfang Chen Rusheng Zhang Xinhua Ou Dong Yao Zheng Huang Linzhi Li Biancheng Sun Primers and probe design and precision assessment of the real time RT-PCR assay in Coxsackievirus A10 and enterovirus detection Data in Brief Real time RT-PCR Coxsackievirus A10 Enterovirus |
| title | Primers and probe design and precision assessment of the real time RT-PCR assay in Coxsackievirus A10 and enterovirus detection |
| title_full | Primers and probe design and precision assessment of the real time RT-PCR assay in Coxsackievirus A10 and enterovirus detection |
| title_fullStr | Primers and probe design and precision assessment of the real time RT-PCR assay in Coxsackievirus A10 and enterovirus detection |
| title_full_unstemmed | Primers and probe design and precision assessment of the real time RT-PCR assay in Coxsackievirus A10 and enterovirus detection |
| title_short | Primers and probe design and precision assessment of the real time RT-PCR assay in Coxsackievirus A10 and enterovirus detection |
| title_sort | primers and probe design and precision assessment of the real time rt pcr assay in coxsackievirus a10 and enterovirus detection |
| topic | Real time RT-PCR Coxsackievirus A10 Enterovirus |
| url | http://www.sciencedirect.com/science/article/pii/S2352340917301671 |
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