Whole-genome sequencing of antimicrobial-resistant Salmonella enterica isolates from a Cairina moschata carcass
Salmonella enterica is one of the most common agents of foodborne bacterial illness with poultry being an important reservoir. The indiscriminate use of antimicrobial compounds in poultry farming increasingly leads to antimicrobial-resistant (AMR) which threatens the health of both animals and human...
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Elsevier
2023-04-01
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| Series: | Data in Brief |
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| Online Access: | http://www.sciencedirect.com/science/article/pii/S2352340923000501 |
| _version_ | 1797867618934194176 |
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| author | Trung Thanh Nguyen Hoa Vinh Le Da Pham Xuan Trung Nghia Vu Minh Hong Nguyen Huyen Thi Thanh Tran |
| author_facet | Trung Thanh Nguyen Hoa Vinh Le Da Pham Xuan Trung Nghia Vu Minh Hong Nguyen Huyen Thi Thanh Tran |
| author_sort | Trung Thanh Nguyen |
| collection | DOAJ |
| description | Salmonella enterica is one of the most common agents of foodborne bacterial illness with poultry being an important reservoir. The indiscriminate use of antimicrobial compounds in poultry farming increasingly leads to antimicrobial-resistant (AMR) which threatens the health of both animals and humans. Antimicrobial-resistant Salmonella enterica from the poultry can spread to human through the direct contact with infected poultry or fecal contaminated environments. Antimicrobial-resistant S. enterica, especially fluoroquinolone-resistant nontyphoidal Salmonella is in the list of global health concern stated by the World Health Organization (WHO). Here we report the whole-genome sequencing data and de novo genome assemble of antimicrobial-resistant S. enterica strains S8 and S9 from the C. moschata carcass collected in Vietnam. Genomic DNA of S. enterica were extracted and subjected to whole-genome sequencing using Illumina MiSeq platform. The genome size of antimicrobial-resistant S. enterica strain S8 is 4,707,459 bp with a GC-content of 52.38%, containing 10 antimicrobial resistant genes. The genome size of antimicrobial-resistant Samonella enterica strain S9 is 4,923,944 bp with a GC-content of 52,39%, containing 10 antimicrobial resistance genes. Our data provided the insights on antimicrobial resistant genes of S. enterica isolates from the C. moschata carcass, which help to understand the infection mechanism of antimicrobial-resistant S. enterica in human. |
| first_indexed | 2024-04-09T23:44:06Z |
| format | Article |
| id | doaj.art-bd64bc7620654a418b9f4a1a08a369f4 |
| institution | Directory Open Access Journal |
| issn | 2352-3409 |
| language | English |
| last_indexed | 2024-04-09T23:44:06Z |
| publishDate | 2023-04-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Data in Brief |
| spelling | doaj.art-bd64bc7620654a418b9f4a1a08a369f42023-03-18T04:41:36ZengElsevierData in Brief2352-34092023-04-0147108932Whole-genome sequencing of antimicrobial-resistant Salmonella enterica isolates from a Cairina moschata carcassTrung Thanh Nguyen0Hoa Vinh Le1Da Pham Xuan2Trung Nghia Vu3Minh Hong Nguyen4Huyen Thi Thanh Tran5Department of Food Microbiology and Genetically Modified Food, Vietnam National Institute for Food Control, Cau Giay, Hanoi, VietnamDepartment of Food Microbiology and Genetically Modified Food, Vietnam National Institute for Food Control, Cau Giay, Hanoi, VietnamCenter for Genetic and Reproductive Health, Faculty of Medicine - Vietnam National University, Ho Chi Minh City, VietnamDepartment of Medical Epidemiology and Biostatistics, Karolinska Institutet, Solna, Stockholm, SwedenBioresource Research Center, Phenikaa University, Hanoi 12116, VietnamVinmec Research Institute of Stemcell and Gene Technology, Hai Ba Trung, Hanoi, Vietnam; Corresponding author at: Vinmec Research Institute of Stemcell and Gene Technology, Hai Ba Trung, Hanoi, Vietnam.Salmonella enterica is one of the most common agents of foodborne bacterial illness with poultry being an important reservoir. The indiscriminate use of antimicrobial compounds in poultry farming increasingly leads to antimicrobial-resistant (AMR) which threatens the health of both animals and humans. Antimicrobial-resistant Salmonella enterica from the poultry can spread to human through the direct contact with infected poultry or fecal contaminated environments. Antimicrobial-resistant S. enterica, especially fluoroquinolone-resistant nontyphoidal Salmonella is in the list of global health concern stated by the World Health Organization (WHO). Here we report the whole-genome sequencing data and de novo genome assemble of antimicrobial-resistant S. enterica strains S8 and S9 from the C. moschata carcass collected in Vietnam. Genomic DNA of S. enterica were extracted and subjected to whole-genome sequencing using Illumina MiSeq platform. The genome size of antimicrobial-resistant S. enterica strain S8 is 4,707,459 bp with a GC-content of 52.38%, containing 10 antimicrobial resistant genes. The genome size of antimicrobial-resistant Samonella enterica strain S9 is 4,923,944 bp with a GC-content of 52,39%, containing 10 antimicrobial resistance genes. Our data provided the insights on antimicrobial resistant genes of S. enterica isolates from the C. moschata carcass, which help to understand the infection mechanism of antimicrobial-resistant S. enterica in human.http://www.sciencedirect.com/science/article/pii/S2352340923000501Salmonella entericaWhole-genome sequencingAntibiotic resistanceCairina moschata |
| spellingShingle | Trung Thanh Nguyen Hoa Vinh Le Da Pham Xuan Trung Nghia Vu Minh Hong Nguyen Huyen Thi Thanh Tran Whole-genome sequencing of antimicrobial-resistant Salmonella enterica isolates from a Cairina moschata carcass Data in Brief Salmonella enterica Whole-genome sequencing Antibiotic resistance Cairina moschata |
| title | Whole-genome sequencing of antimicrobial-resistant Salmonella enterica isolates from a Cairina moschata carcass |
| title_full | Whole-genome sequencing of antimicrobial-resistant Salmonella enterica isolates from a Cairina moschata carcass |
| title_fullStr | Whole-genome sequencing of antimicrobial-resistant Salmonella enterica isolates from a Cairina moschata carcass |
| title_full_unstemmed | Whole-genome sequencing of antimicrobial-resistant Salmonella enterica isolates from a Cairina moschata carcass |
| title_short | Whole-genome sequencing of antimicrobial-resistant Salmonella enterica isolates from a Cairina moschata carcass |
| title_sort | whole genome sequencing of antimicrobial resistant salmonella enterica isolates from a cairina moschata carcass |
| topic | Salmonella enterica Whole-genome sequencing Antibiotic resistance Cairina moschata |
| url | http://www.sciencedirect.com/science/article/pii/S2352340923000501 |
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