Complete mitochondrial genomes for three lizards (Anolis punctatus, Sceloporus woodi, and S. grammicus): a contribution to mitochondrial phylogenomics of Iguanoidea
The complete mitochondrial genomes of the Spotted Anole (Anolis punctatus), Florida Scrub Lizard (Sceloporus woodi), and Mesquite Lizard (S. grammicus) were assembled and annotated. Genomic DNA of A. punctatus was sequenced in one-sixth of a lane in an Illumina HiSeq while comparable sequencing data...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2019-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1574625 |
| _version_ | 1797640496772808704 |
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| author | Ana Teresa Nogueira Dumans Gabriela Warwar Teixeira Gabriel Alves Vieira Deise Schroder Sarzi Carolina Furtado W. Bryan Jennings Francisco Prosdocimi |
| author_facet | Ana Teresa Nogueira Dumans Gabriela Warwar Teixeira Gabriel Alves Vieira Deise Schroder Sarzi Carolina Furtado W. Bryan Jennings Francisco Prosdocimi |
| author_sort | Ana Teresa Nogueira Dumans |
| collection | DOAJ |
| description | The complete mitochondrial genomes of the Spotted Anole (Anolis punctatus), Florida Scrub Lizard (Sceloporus woodi), and Mesquite Lizard (S. grammicus) were assembled and annotated. Genomic DNA of A. punctatus was sequenced in one-sixth of a lane in an Illumina HiSeq while comparable sequencing data for S. woodi and S. grammicus were retrieved from the Short Read Archive (entries SRR1286259 and SRR1145766, respectively). We assembled these mitogenomes using MIRA, NovoPlasty, and/or MITObim software. The resulting whole and circularized mitogenome assemblies exhibited typical vertebrate sequence length and gene organization. We deposited these mitogenomes into public databases under accession numbers MK091854, BK010487, and BK010486, respectively. To verify the taxonomic identifications of our mitogenomes (as iguanian lizards), we conducted maximum likelihood analyses with 14 published mitogenomes from the lizard superfamily Iguanoidea and two outgroups. Our analysis of concatenated gene sequences from mitochondria confirmed the taxonomic identities of our mitogenomes to the genus level. |
| first_indexed | 2024-03-11T13:32:48Z |
| format | Article |
| id | doaj.art-bdadb768d2fc487495b5ee4ee78ea69f |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:32:48Z |
| publishDate | 2019-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-bdadb768d2fc487495b5ee4ee78ea69f2023-11-02T16:07:26ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-01-014170070210.1080/23802359.2019.15746251574625Complete mitochondrial genomes for three lizards (Anolis punctatus, Sceloporus woodi, and S. grammicus): a contribution to mitochondrial phylogenomics of IguanoideaAna Teresa Nogueira Dumans0Gabriela Warwar Teixeira1Gabriel Alves Vieira2Deise Schroder Sarzi3Carolina Furtado4W. Bryan Jennings5Francisco Prosdocimi6Instituto de Bioquímica Médica Leopoldo de Meis, Universidade Federal do Rio de JaneiroInstituto de Bioquímica Médica Leopoldo de Meis, Universidade Federal do Rio de JaneiroInstituto de Bioquímica Médica Leopoldo de Meis, Universidade Federal do Rio de JaneiroInstituto de Bioquímica Médica Leopoldo de Meis, Universidade Federal do Rio de JaneiroDepartamento de Genética, Instituto Nacional de CâncerUniversidade Federal do Rio de JaneiroInstituto de Bioquímica Médica Leopoldo de Meis, Universidade Federal do Rio de JaneiroThe complete mitochondrial genomes of the Spotted Anole (Anolis punctatus), Florida Scrub Lizard (Sceloporus woodi), and Mesquite Lizard (S. grammicus) were assembled and annotated. Genomic DNA of A. punctatus was sequenced in one-sixth of a lane in an Illumina HiSeq while comparable sequencing data for S. woodi and S. grammicus were retrieved from the Short Read Archive (entries SRR1286259 and SRR1145766, respectively). We assembled these mitogenomes using MIRA, NovoPlasty, and/or MITObim software. The resulting whole and circularized mitogenome assemblies exhibited typical vertebrate sequence length and gene organization. We deposited these mitogenomes into public databases under accession numbers MK091854, BK010487, and BK010486, respectively. To verify the taxonomic identifications of our mitogenomes (as iguanian lizards), we conducted maximum likelihood analyses with 14 published mitogenomes from the lizard superfamily Iguanoidea and two outgroups. Our analysis of concatenated gene sequences from mitochondria confirmed the taxonomic identities of our mitogenomes to the genus level.http://dx.doi.org/10.1080/23802359.2019.1574625anolis lizardssceloporus lizardsmitochondrial genomeiguanoideaphylogenomicsmitogenome |
| spellingShingle | Ana Teresa Nogueira Dumans Gabriela Warwar Teixeira Gabriel Alves Vieira Deise Schroder Sarzi Carolina Furtado W. Bryan Jennings Francisco Prosdocimi Complete mitochondrial genomes for three lizards (Anolis punctatus, Sceloporus woodi, and S. grammicus): a contribution to mitochondrial phylogenomics of Iguanoidea Mitochondrial DNA. Part B. Resources anolis lizards sceloporus lizards mitochondrial genome iguanoidea phylogenomics mitogenome |
| title | Complete mitochondrial genomes for three lizards (Anolis punctatus, Sceloporus woodi, and S. grammicus): a contribution to mitochondrial phylogenomics of Iguanoidea |
| title_full | Complete mitochondrial genomes for three lizards (Anolis punctatus, Sceloporus woodi, and S. grammicus): a contribution to mitochondrial phylogenomics of Iguanoidea |
| title_fullStr | Complete mitochondrial genomes for three lizards (Anolis punctatus, Sceloporus woodi, and S. grammicus): a contribution to mitochondrial phylogenomics of Iguanoidea |
| title_full_unstemmed | Complete mitochondrial genomes for three lizards (Anolis punctatus, Sceloporus woodi, and S. grammicus): a contribution to mitochondrial phylogenomics of Iguanoidea |
| title_short | Complete mitochondrial genomes for three lizards (Anolis punctatus, Sceloporus woodi, and S. grammicus): a contribution to mitochondrial phylogenomics of Iguanoidea |
| title_sort | complete mitochondrial genomes for three lizards anolis punctatus sceloporus woodi and s grammicus a contribution to mitochondrial phylogenomics of iguanoidea |
| topic | anolis lizards sceloporus lizards mitochondrial genome iguanoidea phylogenomics mitogenome |
| url | http://dx.doi.org/10.1080/23802359.2019.1574625 |
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