Glycan Degradation (GlyDeR) Analysis Predicts Mammalian Gut Microbiota Abundance and Host Diet-Specific Adaptations

Glycan Degradation (GlyDeR) Analysis Predicts Mammalian Gut Microbiota Abundance and Host Diet-Specific Adaptations

ABSTRACT Glycans form the primary nutritional source for microbes in the human gut, and understanding their metabolism is a critical yet understudied aspect of microbiome research. Here, we present a novel computational pipeline for modeling glycan degradation (GlyDeR) which predicts the glycan degr...

पूर्ण विवरण

ग्रंथसूची विवरण
मुख्य लेखकों:	Omer Eilam, Raphy Zarecki, Matthew Oberhardt, Luke K. Ursell, Martin Kupiec, Rob Knight, Uri Gophna, Eytan Ruppin
स्वरूप:	लेख
भाषा:	English
प्रकाशित:	American Society for Microbiology 2014-08-01
श्रृंखला:	mBio
ऑनलाइन पहुंच:	https://journals.asm.org/doi/10.1128/mBio.01526-14

समान संसाधन

A novel nutritional predictor links microbial fastidiousness with lowered ubiquity, growth rate, and cooperativeness.
द्वारा: Raphy Zarecki, और अन्य
प्रकाशित: (2014-07-01)

Maximal sum of metabolic exchange fluxes outperforms biomass yield as a predictor of growth rate of microorganisms.
द्वारा: Raphy Zarecki, और अन्य
प्रकाशित: (2014-01-01)

Systems-Wide Prediction of Enzyme Promiscuity Reveals a New Underground Alternative Route for Pyridoxal 5'-Phosphate Production in E. coli.
द्वारा: Matthew A Oberhardt, और अन्य
प्रकाशित: (2016-01-01)

Determinants of protein abundance and translation efficiency in S. cerevisiae.
द्वारा: Tamir Tuller, और अन्य
प्रकाशित: (2007-12-01)

Decoupling Environment-Dependent and Independent Genetic Robustness across Bacterial Species.
द्वारा: Shiri Freilich, और अन्य
प्रकाशित: (2010-02-01)

Data-Driven Metabolic Pathway Compositions Enhance Cancer Survival Prediction.
द्वारा: Noam Auslander, और अन्य
प्रकाशित: (2016-09-01)

Properties of untranslated regions of the <it>S. cerevisiae </it>genome
द्वारा: Tuller Tamir, और अन्य
प्रकाशित: (2009-08-01)

Restricted processing of glycans by endomannosidase in mammalian cells.
द्वारा: Kukushkin, N, और अन्य
प्रकाशित: (2012)

Information transfer in mammalian glycan-based communication
द्वारा: Felix F Fuchsberger, और अन्य
प्रकाशित: (2023-02-01)

Mammalian cell-based production of glycans, glycopeptides and glycomodules
द्वारा: Thapakorn Jaroentomeechai, और अन्य
प्रकाशित: (2024-11-01)

Systems analysis of N-glycan processing in mammalian cells.
द्वारा: Patrick Hossler, और अन्य
प्रकाशित: (2007-08-01)

Specific Changes in the Mammalian Gut Microbiome as a Biomarker for Oxytocin-Induced Behavioral Changes
द्वारा: Itzhak Dangoor, और अन्य
प्रकाशित: (2021-09-01)

Metabolic modeling predicts perturbations extending lifespan in yeast and counteracting aging in mammalian muscle
द्वारा: Yizhak Keren, और अन्य
प्रकाशित: (2012-06-01)

Human FSH Glycoform α-Subunit Asparagine52 Glycans: Major Glycan Structural Consistency, Minor Glycan Variation in Abundance
द्वारा: Viktor Y. Butnev, और अन्य
प्रकाशित: (2022-10-01)

GlyLES: Grammar-based Parsing of Glycans from IUPAC-condensed to SMILES
द्वारा: Roman Joeres, और अन्य
प्रकाशित: (2023-03-01)

Complex N-glycans are essential, but core 1 and 2 mucin O-glycans, O-fucose glycans, and NOTCH1 are dispensable, for mammalian spermatogenesis.
द्वारा: Batista, F, और अन्य
प्रकाशित: (2012)

Targeting of Mammalian Glycans Enhances Phage Predation in the Gastrointestinal Tract
द्वारा: Sabrina I. Green, और अन्य
प्रकाशित: (2021-02-01)

Protocol for analyzing the biosynthesis and degradation of N-glycan precursors in mammalian cells
द्वारा: Yoichiro Harada, और अन्य
प्रकाशित: (2021-03-01)

A systems‐level approach to mapping the telomere length maintenance gene circuitry
द्वारा: Rafi Shachar, और अन्य
प्रकाशित: (2008-03-01)

Quantitative analysis of genetic and neuronal multi-perturbation experiments.
द्वारा: Alon Kaufman, और अन्य
प्रकाशित: (2005-11-01)

Genome-scale analysis of translation elongation with a ribosome flow model.
द्वारा: Shlomi Reuveni, और अन्य
प्रकाशित: (2011-09-01)

Strategies for Enhancing in vitro Degradation of Linuron by Variovorax sp. Strain SRS 16 Under the Guidance of Metabolic Modeling
द्वारा: Kusum Dhakar, और अन्य
प्रकाशित: (2021-04-01)

Structural basis of mammalian glycan targeting by Vibrio cholerae cytolysin and biofilm proteins.
द्वारा: Swastik De, और अन्य
प्रकाशित: (2018-02-01)

Mammalian brain glycoproteins exhibit diminished glycan complexity compared to other tissues
द्वारा: Sarah E. Williams, और अन्य
प्रकाशित: (2022-01-01)

High Abundance of Unusual High Mannose N‑Glycans Found in Beans
द्वारा: Chia Yen Liew, और अन्य
प्रकाशित: (2024-11-01)

The abundance of short proteins in the mammalian proteome.
प्रकाशित: (2006-04-01)

The abundance of short proteins in the mammalian proteome.
द्वारा: Martin C Frith, और अन्य
प्रकाशित: (2006-04-01)

Coordinated translocation of mammalian Gli proteins and suppressor of fused to the primary cilium.
द्वारा: Huiqing Zeng, और अन्य
प्रकाशित: (2010-12-01)

Improved Evidence-Based Genome-scale Metabolic Models for Maize Leaf, Embryo, and Endosperm.
द्वारा: Samuel eSeaver, और अन्य
प्रकाशित: (2015-03-01)

Structural basis of mammalian high-mannose N-glycan processing by human gut Bacteroides
द्वारा: Beatriz Trastoy, और अन्य
प्रकाशित: (2020-02-01)

N-Glycans and sulfated glycosaminoglycans contribute to the action of diverse Tc toxins on mammalian cells.
द्वारा: Nan Song, और अन्य
प्रकाशित: (2021-02-01)

Locust Bacterial Symbionts: An Update
द्वारा: Omer Lavy, और अन्य
प्रकाशित: (2020-09-01)

The Effect of Density-Dependent Phase on the Locust Gut Bacterial Composition
द्वारा: Omer Lavy, और अन्य
प्रकाशित: (2019-01-01)

A Comparison of Ci/Gli Activity as Regulated by Sufu in Drosophila and Mammalian Hedgehog Response.
द्वारा: Sekyung Oh, और अन्य
प्रकाशित: (2015-01-01)

Toward accurate reconstruction of functional protein networks
द्वारा: Nir Yosef, और अन्य
प्रकाशित: (2009-03-01)

Cell-based glycan arrays for probing glycan–glycan binding protein interactions
द्वारा: Jennie Grace Briard, और अन्य
प्रकाशित: (2018-02-01)

Toward reliable estimates of abundance: comparing index methods to assess the abundance of a Mammalian predator.
द्वारा: Denise Güthlin, और अन्य
प्रकाशित: (2014-01-01)

GlycoForm and Glycologue: two software applications for the rapid construction and display of <it>N</it>-glycans from mammalian sources
द्वारा: Tipton Keith F, और अन्य
प्रकाशित: (2010-06-01)

Deriving enzymatic and taxonomic signatures of metagenomes from short read data
द्वारा: Gophna Uri, और अन्य
प्रकाशित: (2010-07-01)

287 Identification of potentially safe and selective CAR targets for head and neck cancer via a pan-cancer single cell transcriptome analysis
द्वारा: Eytan Ruppin, और अन्य
प्रकाशित: (2023-11-01)