Transcription Factors Expressed in Mouse Cochlear Inner and Outer Hair Cells.
Regulation of gene expression is essential to determining the functional complexity and morphological diversity seen among different cells. Transcriptional regulation is a crucial step in gene expression regulation because the genetic information is directly read from DNA by sequence-specific transc...
| Main Authors: | , , , , , , , , |
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| Format: | Article |
| Language: | English |
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Public Library of Science (PLoS)
2016-01-01
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| Series: | PLoS ONE |
| Online Access: | http://europepmc.org/articles/PMC4790917?pdf=render |
| _version_ | 1818300699245543424 |
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| author | Yi Li Huizhan Liu Cody L Barta Paul D Judge Lidong Zhao Weiping J Zhang Shusheng Gong Kirk W Beisel David Z Z He |
| author_facet | Yi Li Huizhan Liu Cody L Barta Paul D Judge Lidong Zhao Weiping J Zhang Shusheng Gong Kirk W Beisel David Z Z He |
| author_sort | Yi Li |
| collection | DOAJ |
| description | Regulation of gene expression is essential to determining the functional complexity and morphological diversity seen among different cells. Transcriptional regulation is a crucial step in gene expression regulation because the genetic information is directly read from DNA by sequence-specific transcription factors (TFs). Although several mouse TF databases created from genome sequences and transcriptomes are available, a cell type-specific TF database from any normal cell populations is still lacking. We identify cell type-specific TF genes expressed in cochlear inner hair cells (IHCs) and outer hair cells (OHCs) using hair cell-specific transcriptomes from adult mice. IHCs and OHCs are the two types of sensory receptor cells in the mammalian cochlea. We show that 1,563 and 1,616 TF genes are respectively expressed in IHCs and OHCs among 2,230 putative mouse TF genes. While 1,536 are commonly expressed in both populations, 73 genes are differentially expressed (with at least a twofold difference) in IHCs and 13 are differentially expressed in OHCs. Our datasets represent the first cell type-specific TF databases for two populations of sensory receptor cells and are key informational resources for understanding the molecular mechanism underlying the biological properties and phenotypical differences of these cells. |
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| id | doaj.art-bf76ec4af1ea4ca9b77ffdd5eb6e63e3 |
| institution | Directory Open Access Journal |
| issn | 1932-6203 |
| language | English |
| last_indexed | 2024-12-13T05:11:16Z |
| publishDate | 2016-01-01 |
| publisher | Public Library of Science (PLoS) |
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| series | PLoS ONE |
| spelling | doaj.art-bf76ec4af1ea4ca9b77ffdd5eb6e63e32022-12-21T23:58:32ZengPublic Library of Science (PLoS)PLoS ONE1932-62032016-01-01113e015129110.1371/journal.pone.0151291Transcription Factors Expressed in Mouse Cochlear Inner and Outer Hair Cells.Yi LiHuizhan LiuCody L BartaPaul D JudgeLidong ZhaoWeiping J ZhangShusheng GongKirk W BeiselDavid Z Z HeRegulation of gene expression is essential to determining the functional complexity and morphological diversity seen among different cells. Transcriptional regulation is a crucial step in gene expression regulation because the genetic information is directly read from DNA by sequence-specific transcription factors (TFs). Although several mouse TF databases created from genome sequences and transcriptomes are available, a cell type-specific TF database from any normal cell populations is still lacking. We identify cell type-specific TF genes expressed in cochlear inner hair cells (IHCs) and outer hair cells (OHCs) using hair cell-specific transcriptomes from adult mice. IHCs and OHCs are the two types of sensory receptor cells in the mammalian cochlea. We show that 1,563 and 1,616 TF genes are respectively expressed in IHCs and OHCs among 2,230 putative mouse TF genes. While 1,536 are commonly expressed in both populations, 73 genes are differentially expressed (with at least a twofold difference) in IHCs and 13 are differentially expressed in OHCs. Our datasets represent the first cell type-specific TF databases for two populations of sensory receptor cells and are key informational resources for understanding the molecular mechanism underlying the biological properties and phenotypical differences of these cells.http://europepmc.org/articles/PMC4790917?pdf=render |
| spellingShingle | Yi Li Huizhan Liu Cody L Barta Paul D Judge Lidong Zhao Weiping J Zhang Shusheng Gong Kirk W Beisel David Z Z He Transcription Factors Expressed in Mouse Cochlear Inner and Outer Hair Cells. PLoS ONE |
| title | Transcription Factors Expressed in Mouse Cochlear Inner and Outer Hair Cells. |
| title_full | Transcription Factors Expressed in Mouse Cochlear Inner and Outer Hair Cells. |
| title_fullStr | Transcription Factors Expressed in Mouse Cochlear Inner and Outer Hair Cells. |
| title_full_unstemmed | Transcription Factors Expressed in Mouse Cochlear Inner and Outer Hair Cells. |
| title_short | Transcription Factors Expressed in Mouse Cochlear Inner and Outer Hair Cells. |
| title_sort | transcription factors expressed in mouse cochlear inner and outer hair cells |
| url | http://europepmc.org/articles/PMC4790917?pdf=render |
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