SeamDock: An Interactive and Collaborative Online Docking Resource to Assist Small Compound Molecular Docking

SeamDock: An Interactive and Collaborative Online Docking Resource to Assist Small Compound Molecular Docking

In silico assessment of protein receptor interactions with small ligands is now part of the standard pipeline for drug discovery, and numerous tools and protocols have been developed for this purpose. With the SeamDock web server, we propose a new approach to facilitate access to small molecule dock...

Disgrifiad llawn

Manylion Llyfryddiaeth
Prif Awduron:	Samuel Murail, Sjoerd J. de Vries, Julien Rey, Gautier Moroy, Pierre Tufféry
Fformat:	Erthygl
Iaith:	English
Cyhoeddwyd:	Frontiers Media S.A. 2021-09-01
Cyfres:	Frontiers in Molecular Biosciences
Pynciau:	molecular docking web-server virtual screening drug discovery collaborative sessions
Mynediad Ar-lein:	https://www.frontiersin.org/articles/10.3389/fmolb.2021.716466/full

Eitemau Tebyg

ReverseDock: a web server for blind docking of a single ligand to multiple protein targets using AutoDock Vina
gan: Fabian Krause, et al.
Cyhoeddwyd: (2023-10-01)

An information gain-based approach for evaluating protein structure models
gan: Guillaume Postic, et al.
Cyhoeddwyd: (2020-01-01)

HIPPO: HIstogram-based Pseudo-POtential for scoring protein-ssRNA fragment-based docking poses
gan: Anna Kravchenko, et al.
Cyhoeddwyd: (2024-03-01)

PacDOCK: A Web Server for Positional Distance-Based and Interaction-Based Analysis of Docking Results
gan: Jacopo Carbone, et al.
Cyhoeddwyd: (2022-10-01)

EasyDock: customizable and scalable docking tool
gan: Guzel Minibaeva, et al.
Cyhoeddwyd: (2023-11-01)

The search of sequence variants using a constrained protein evolution simulation approach
gan: Pierre Tufféry, et al.
Cyhoeddwyd: (2020-01-01)

ACID: a free tool for drug repurposing using consensus inverse docking strategy
gan: Fan Wang, et al.
Cyhoeddwyd: (2019-11-01)

CSAlign and CSAlign-Dock: Structure alignment of ligands considering full flexibility and application to protein–ligand docking
gan: Sohee Kwon, et al.
Cyhoeddwyd: (2023-01-01)

Comprehensive Survey of Consensus Docking for High-Throughput Virtual Screening
gan: Clara Blanes-Mira, et al.
Cyhoeddwyd: (2022-12-01)

Applications of molecular docking in natural products-based drug discovery
gan: Isaac Asiamah, et al.
Cyhoeddwyd: (2023-07-01)

DockStream: a docking wrapper to enhance de novo molecular design
gan: Jeff Guo, et al.
Cyhoeddwyd: (2021-11-01)

Molecular Docking Approach for Biological Interaction of Green Synthesized Nanoparticles
gan: Pallab Kar, et al.
Cyhoeddwyd: (2024-05-01)

Performance evaluation of flexible macrocycle docking in AutoDock
gan: Matthew Holcomb, et al.
Cyhoeddwyd: (2022-01-01)

Molecular Docking of Isolated Alkaloids for Possible α-Glucosidase Inhibition
gan: Noor Rahman, et al.
Cyhoeddwyd: (2019-09-01)

Influence of Block Structure on Dock Floor and Foundation Under Moonpool of Docks
gan: CHE Yue, LI Yun, ZHOU Bing, JIN Guolong, ZHU Xiaodong, ZHOU Dongrong
Cyhoeddwyd: (2023-10-01)

Survey of public domain software for docking simulations and virtual screening
gan: Biesiada Jacek, et al.
Cyhoeddwyd: (2011-07-01)

Worldwide shiprepair docks
Cyhoeddwyd: ( 198)

Worldwide shiprepair docks
Cyhoeddwyd: (1988)

Dock and harbour authority
Cyhoeddwyd: (1920)

Dock and harbour engineering /
gan: 415025 Cornick, Henry F., et al.
Cyhoeddwyd: (1958)

An accurate and universal protein-small molecule batch docking solution using Autodock Vina
gan: Xinhao Che, et al.
Cyhoeddwyd: (2023-09-01)

Deep graph learning in molecular docking: Advances and opportunities
gan: Norberto Sánchez-Cruz
Cyhoeddwyd: (2023-12-01)

Improving Blind Docking in DOCK6 through an Automated Preliminary Fragment Probing Strategy
gan: Paula Jofily, et al.
Cyhoeddwyd: (2021-02-01)

Floating docks 1966-1975
gan: British Ship Research Association
Cyhoeddwyd: ([19-)

Tail Docking of Piglets 2: Effects of Meloxicam on the Stress Response to Tail Docking
gan: Rebecca Morrison, et al.
Cyhoeddwyd: (2020-09-01)

An Ant Colony Optimization for the Multi-Dock Truck Scheduling Problem with Cross-Docking
gan: Chi-Yuan Luo, et al.
Cyhoeddwyd: (2017-09-01)

Design and Analysis of A New Docking Device for Satellite Docking Ring
gan: Gao Bixiang, et al.
Cyhoeddwyd: (2016-01-01)

Structural Safety Assessment of a Floating Dock during Docking Operation
gan: Mohamed El-Maadawy, et al.
Cyhoeddwyd: (2018-09-01)

Actin Up: An Overview of the Rac GEF Dock1/Dock180 and Its Role in Cytoskeleton Rearrangement
gan: Emily J. Koubek, et al.
Cyhoeddwyd: (2022-11-01)

Dock and harbour authority [mikrofilem]
Cyhoeddwyd: (1980)

Design and construction of dry docks /
gan: 408027 Mazurkiewicz, B. K.
Cyhoeddwyd: (1980)

CONSTRUCTION OF THREE DIMENSIONAL STRUCTURES OF PHYTOESTROGENS CONVERTED FROM SMILES STRING REPRESENTATIONS FOR SIMULATIONS USING PLANTS DOCKING SOFTWARE
gan: Enade Perdana Istyastono, et al.
Cyhoeddwyd: (2016-08-01)

A perspective on the sharing of docking data
gan: Samia Aci-Sèche, et al.
Cyhoeddwyd: (2023-08-01)

Floating docks (references prior to 1966)
gan: British Ship Research Association
Cyhoeddwyd: (1971)

Integration of Molecular Docking and In Vitro Studies: A Powerful Approach for Drug Discovery in Breast Cancer
gan: Claudia Cava, et al.
Cyhoeddwyd: (2020-10-01)

Docking Strategy for a Space Station Container Docking Device Based on Adaptive Sensing
gan: Gang Wang, et al.
Cyhoeddwyd: (2019-01-01)

Tail Docking of Piglets 1: Stress Response of Piglets to Tail Docking
gan: Rebecca Morrison, et al.
Cyhoeddwyd: (2020-09-01)

CPORT: a consensus interface predictor and its performance in prediction-driven docking with HADDOCK.
gan: Sjoerd J de Vries, et al.
Cyhoeddwyd: (2011-01-01)

Safe operation and maintenance of dry dock facilities /
gan: Harren, Paul A., editor, et al.
Cyhoeddwyd: (c201)

ER/AR Multi-Conformational Docking Server: A Tool for Discovering and Studying Estrogen and Androgen Receptor Modulators
gan: Feng Wang, et al.
Cyhoeddwyd: (2022-01-01)