The complete plastome of tropical fruit Garcinia mangostana (Clusiaceae)
The complete plastome sequence of Garcinia mangostana L. (Clusiaceae) is completed in this study (NCBI acc. no. KX822787). This is a first complete plastome sequence from the Clusiaceae. The complete plastome size is 158,179 bp in length and consists of a large single copy of 86,458 bp and a small s...
| Main Authors: | , , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2017-12-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2017.1390406 |
| _version_ | 1797640783286763520 |
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| author | Sangjin Jo Hoe-Won Kim Young-Kee Kim Jung-Yeon Sohn Se-Hwan Cheon Ki-Joong Kim |
| author_facet | Sangjin Jo Hoe-Won Kim Young-Kee Kim Jung-Yeon Sohn Se-Hwan Cheon Ki-Joong Kim |
| author_sort | Sangjin Jo |
| collection | DOAJ |
| description | The complete plastome sequence of Garcinia mangostana L. (Clusiaceae) is completed in this study (NCBI acc. no. KX822787). This is a first complete plastome sequence from the Clusiaceae. The complete plastome size is 158,179 bp in length and consists of a large single copy of 86,458 bp and a small single copy of 17,703 bp, separated by two inverted repeats of 27,009 bp. The G. mangostana plastome shows four minor structural modifications including infA gene loss, rpl32 gene loss, ycf3 gene intron loss and a 363 bp inversion between trnV-UAC and atpE gene. The plastome contains 111 genes, of which 77 are protein-coding genes, 30 are tRNA genes and four are rRNA genes. The average A-T content of the plastome is 63.9%. A total of 110 simple sequence loci are identified from the genome. Phylogenetic analysis reveals that G. mangostana is a sister group of Erythroxylum novogranatense (Erythroxylaceae) with 78% bootstrap support. |
| first_indexed | 2024-03-11T13:36:42Z |
| format | Article |
| id | doaj.art-bfb43e0b4272417b89d103bdae5a0082 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:36:42Z |
| publishDate | 2017-12-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-bfb43e0b4272417b89d103bdae5a00822023-11-02T15:42:58ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592017-12-012272272410.1080/23802359.2017.13904061390406The complete plastome of tropical fruit Garcinia mangostana (Clusiaceae)Sangjin Jo0Hoe-Won Kim1Young-Kee Kim2Jung-Yeon Sohn3Se-Hwan Cheon4Ki-Joong Kim5Korea UniversityKorea UniversityKorea UniversityKorea UniversityKorea UniversityKorea UniversityThe complete plastome sequence of Garcinia mangostana L. (Clusiaceae) is completed in this study (NCBI acc. no. KX822787). This is a first complete plastome sequence from the Clusiaceae. The complete plastome size is 158,179 bp in length and consists of a large single copy of 86,458 bp and a small single copy of 17,703 bp, separated by two inverted repeats of 27,009 bp. The G. mangostana plastome shows four minor structural modifications including infA gene loss, rpl32 gene loss, ycf3 gene intron loss and a 363 bp inversion between trnV-UAC and atpE gene. The plastome contains 111 genes, of which 77 are protein-coding genes, 30 are tRNA genes and four are rRNA genes. The average A-T content of the plastome is 63.9%. A total of 110 simple sequence loci are identified from the genome. Phylogenetic analysis reveals that G. mangostana is a sister group of Erythroxylum novogranatense (Erythroxylaceae) with 78% bootstrap support.http://dx.doi.org/10.1080/23802359.2017.1390406plastomegene and intron lossessmall inversitiongarcinia mangostanaclusiaceae |
| spellingShingle | Sangjin Jo Hoe-Won Kim Young-Kee Kim Jung-Yeon Sohn Se-Hwan Cheon Ki-Joong Kim The complete plastome of tropical fruit Garcinia mangostana (Clusiaceae) Mitochondrial DNA. Part B. Resources plastome gene and intron losses small inversition garcinia mangostana clusiaceae |
| title | The complete plastome of tropical fruit Garcinia mangostana (Clusiaceae) |
| title_full | The complete plastome of tropical fruit Garcinia mangostana (Clusiaceae) |
| title_fullStr | The complete plastome of tropical fruit Garcinia mangostana (Clusiaceae) |
| title_full_unstemmed | The complete plastome of tropical fruit Garcinia mangostana (Clusiaceae) |
| title_short | The complete plastome of tropical fruit Garcinia mangostana (Clusiaceae) |
| title_sort | complete plastome of tropical fruit garcinia mangostana clusiaceae |
| topic | plastome gene and intron losses small inversition garcinia mangostana clusiaceae |
| url | http://dx.doi.org/10.1080/23802359.2017.1390406 |
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