De novo Genome Assembly, Annotation, and SNP Identification of an Endangered Rockcress, Boechera fecunda

De novo Genome Assembly, Annotation, and SNP Identification of an Endangered Rockcress, Boechera fecunda

Bibliographic Details
Main Authors:	Hengyou Zhang, Thomas Mitchell-Olds, Ibro Mujacic, Bao-Hua Song
Format:	Article
Language:	English
Published:	Frontiers Media S.A. 2020-10-01
Series:	Frontiers in Ecology and Evolution
Subjects:	conservation ecological adaptation evolution genome sequence polymorphism SNP
Online Access:	https://www.frontiersin.org/articles/10.3389/fevo.2020.550936/full

Similar Items

1000 human genomes carry widespread signatures of GC biased gene conversion
by: Rajib Dutta, et al.
Published: (2018-04-01)

Potato Cultivar Identification in South Africa Using a Custom SNP Panel
by: Inge Gazendam, et al.
Published: (2022-06-01)

An improved allele-specific PCR primer design method for SNP marker analysis and its application
by: Liu Jing, et al.
Published: (2012-08-01)

The Functional Change and Deletion of FLC Homologs Contribute to the Evolution of Rapid Flowering in Boechera stricta
by: Cheng-Ruei Lee, et al.
Published: (2018-07-01)

Single Nucleotide Polymorphisms (SNP) and SNP-SNP Interactions of the Surfactant Protein Genes Are Associated With Idiopathic Pulmonary Fibrosis in a Mexican Study Group; Comparison With Hypersensitivity Pneumonitis
by: Ata Abbasi, et al.
Published: (2022-06-01)

A review on SNP and other types of molecular markers and their use in animal genetics
by: Eggen André, et al.
Published: (2002-05-01)

Ancient polymorphisms contribute to genome-wide variation by long-term balancing selection and divergent sorting in Boechera stricta
by: Baosheng Wang, et al.
Published: (2019-06-01)

snpGeneSets: An R Package for Genome-Wide Study Annotation
by: Hao Mei, et al.
Published: (2016-12-01)

PRESENCE OF SNP OF INTERLEUKIN17F IN PATIENTS WITH PERIODONTITIS IN A BULGARIAN POPULATION
by: Antoaneta Mlachkova, et al.
Published: (2021-04-01)

SNPTracker: A Swift Tool for Comprehensive Tracking and Unifying dbSNP rs IDs and Genomic Coordinates of Massive Sequence Variants
by: Jia-En Deng, et al.
Published: (2016-01-01)

Fine mapping of copy number variations on two cattle genome assemblies using high density SNP array
by: Hou Yali, et al.
Published: (2012-08-01)

De novo assembly of the Brown trout (Salmo trutta m. fario) brain and muscle transcriptome: transcript annotation, tissue differential expression profile and SNP discovery
by: J. Fibla, et al.
Published: (2020-11-01)

FeatSNP: An Interactive Database for Brain-Specific Epigenetic Annotation of Human SNPs
by: Chun-yu Ma, et al.
Published: (2019-04-01)

Plant Resistance Gene, SNP and Genome Annotation an Overview
by: Nor S. Zaimah
Published: (2019-08-01)

Integration of Infinium and Axiom SNP array data in the outcrossing species Malus × domestica and causes for seemingly incompatible calls
by: Nicholas P. Howard, et al.
Published: (2021-04-01)

Innovative strategies for annotating the “relationSNP” between variants and molecular phenotypes
by: Jason E. Miller, et al.
Published: (2019-05-01)

Genetic Analysis of Potato Breeding Collection Using Single-Nucleotide Polymorphism (SNP) Markers
by: Xi-ou Xiao, et al.
Published: (2023-05-01)

Fuzzy Logic System Application for Detecting SNP-SNP Interaction
by: Cheng-Hong Yang, et al.
Published: (2020-01-01)

De Novo Transcriptome Assembly and SNP Discovery for the Development of dCAPS Markers in Oat
by: Tae-Heon Kim, et al.
Published: (2022-01-01)

Different transcript patterns in response to specialist and generalist herbivores in the wild Arabidopsis relative Boechera divaricarpa.
by: Heiko Vogel, et al.
Published: (2007-01-01)

Large-scale deployment of a rice 6 K SNP array for genetics and breeding applications
by: Michael J. Thomson, et al.
Published: (2017-08-01)

Evolution of an Apomixis-Specific Allele Class in Supernumerary Chromatin of Apomictic Boechera
by: Martin Mau, et al.
Published: (2022-06-01)

SNP-IT Tool for Identifying Subspecies and Associated Lineages of Mycobacterium tuberculosis Complex
by: Samuel Lipworth, et al.
Published: (2019-03-01)

Identification of genome-wide SNP-SNP interactions associated with important traits in chicken
by: Hui Zhang, et al.
Published: (2017-11-01)

Sequencing and De Novo Transcriptome Assembly of <i>Brachypodium sylvaticum</i> (Poaceae)
by: Samuel E. Fox, et al.
Published: (2013-03-01)

Current limitations of SNP data from the public domain for studies of complex disorders: a test for ten candidate genes for obesity and osteoporosis
by: Xiao Peng, et al.
Published: (2004-02-01)

Association of an <it>NFKB1</it> intron SNP (rs4648068) with gastric cancer patients in the Han Chinese population
by: Lu Renquan, et al.
Published: (2012-07-01)

SNP-analysis in certification and identification of maize lines
by: Т. М. Сатарова, et al.
Published: (2014-11-01)

Discovery of Single Nucleotide Polymorphisms in Complex Genomes Using SGSautoSNP
by: Jacqueline Batley, et al.
Published: (2012-08-01)

Genomic inbreeding coefficients using imputed genotypes: assessing differences among SNP panels in Holstein-Friesian dairy cows
by: Christos Dadousis, et al.
Published: (2023-04-01)

The First Meta-Analysis of the M129V Single-Nucleotide Polymorphism (SNP) of the Prion Protein Gene (<i>PRNP</i>) with Sporadic Creutzfeldt–Jakob Disease
by: Yong-Chan Kim, et al.
Published: (2021-11-01)

Candidate SNP markers of gender-biased autoimmune complications of monogenic diseases are predicted by a significant change in the affinity of TATA-binding protein for human gene promoters
by: Mikhail P. Ponomarenko
Published: (2016-04-01)

ESTIMATION OF GENOMIC VARIATION IN CERVIDS USING CROSS-SPECIES APPLICATION OF SNP ARRAYS
by: Nina Moravčíková, et al.
Published: (2015-09-01)

Tres décadas fecundas

Detecting SNP–SNP Interactions in Imbalanced Case-Control Study
by: Cheng-Hong Yang, et al.
Published: (2019-01-01)

De Novo SNP Discovery and Genotyping of Masson Pine (<i>Pinus massoniana</i> Lamb.) via Genotyping-by-Sequencing
by: Peng-Le Li, et al.
Published: (2023-02-01)

SNP discovery and genetic structure in blue mussel species using low coverage sequencing and a medium density 60 K SNP‐array
by: Jennifer C. Nascimento‐Schulze, et al.
Published: (2023-05-01)

Assessment of SNP-SNP interactions by using square contingency table analysis
by: ÖZGE KARADAĞ, et al.
Published: (2020-11-01)

Analysis of SSR and SNP Loci in Agrotis segetum Based on Transcriptome Sequencing
by: Hong CHANG, et al.
Published: (2022-02-01)

Advantages of Amplifluor-like SNP markers over KASP in plant genotyping
by: Satyvaldy Jatayev, et al.
Published: (2017-12-01)