A chromosome-level genome assembly of the miiuy croaker (Miichthys miiuy) using nanopore sequencing and Hi-C
Miiuy croaker, Miichthys miiuy is an ecologically important teleost species which is widely distributed in southeast coast of China. In this study, we present a chromosomal-scale genome assembly of the miiuy croaker which is an important Sciaenidae fish and economical species. We adopted Oxford Nano...
| Main Authors: | , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
KeAi Communications Co., Ltd.
2024-03-01
|
| Series: | Aquaculture and Fisheries |
| Subjects: | |
| Online Access: | http://www.sciencedirect.com/science/article/pii/S2468550X21000691 |
| _version_ | 1797317146186874880 |
|---|---|
| author | Tianjun Xu Ye Li Weiwei Zheng Yuena Sun |
| author_facet | Tianjun Xu Ye Li Weiwei Zheng Yuena Sun |
| author_sort | Tianjun Xu |
| collection | DOAJ |
| description | Miiuy croaker, Miichthys miiuy is an ecologically important teleost species which is widely distributed in southeast coast of China. In this study, we present a chromosomal-scale genome assembly of the miiuy croaker which is an important Sciaenidae fish and economical species. We adopted Oxford Nanopore and Hi-C sequencing techniques to achieve an assembly with high accuracy and completeness. The investigation of genome characteristic and functional features may provide insights into the study of phylogenetic diversity of miiuy croaker. This study can also be beneficial to improve molecular assisted breeding techniques. Moreover, it can be a great resource to better conduct further study of other sciaenids. |
| first_indexed | 2024-03-08T03:29:40Z |
| format | Article |
| id | doaj.art-c100db9171014b9c8845fa071ba36977 |
| institution | Directory Open Access Journal |
| issn | 2468-550X |
| language | English |
| last_indexed | 2024-03-08T03:29:40Z |
| publishDate | 2024-03-01 |
| publisher | KeAi Communications Co., Ltd. |
| record_format | Article |
| series | Aquaculture and Fisheries |
| spelling | doaj.art-c100db9171014b9c8845fa071ba369772024-02-11T05:11:44ZengKeAi Communications Co., Ltd.Aquaculture and Fisheries2468-550X2024-03-0192218225A chromosome-level genome assembly of the miiuy croaker (Miichthys miiuy) using nanopore sequencing and Hi-CTianjun Xu0Ye Li1Weiwei Zheng2Yuena Sun3Laboratory of Fish Molecular Immunology, College of Fisheries and Life Science, Shanghai Ocean University, Shanghai, 201306, China; Laboratory of Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao, 266200, China; Key Laboratory of Exploration and Utilization of Aquatic Genetic Resources (Shanghai Ocean University), Ministry of Education, Shanghai, 201306, China; National Pathogen Collection Center for Aquatic Animals, Shanghai Ocean University, Shanghai, 201306, China; Corresponding author. Laboratory of Fish Molecular Immunology, College of Fisheries and Life Science, Shanghai Ocean University, Shanghai, 201306, China.Laboratory of Fish Molecular Immunology, College of Fisheries and Life Science, Shanghai Ocean University, Shanghai, 201306, ChinaLaboratory of Fish Molecular Immunology, College of Fisheries and Life Science, Shanghai Ocean University, Shanghai, 201306, ChinaLaboratory of Fish Molecular Immunology, College of Fisheries and Life Science, Shanghai Ocean University, Shanghai, 201306, China; Key Laboratory of Exploration and Utilization of Aquatic Genetic Resources (Shanghai Ocean University), Ministry of Education, Shanghai, 201306, ChinaMiiuy croaker, Miichthys miiuy is an ecologically important teleost species which is widely distributed in southeast coast of China. In this study, we present a chromosomal-scale genome assembly of the miiuy croaker which is an important Sciaenidae fish and economical species. We adopted Oxford Nanopore and Hi-C sequencing techniques to achieve an assembly with high accuracy and completeness. The investigation of genome characteristic and functional features may provide insights into the study of phylogenetic diversity of miiuy croaker. This study can also be beneficial to improve molecular assisted breeding techniques. Moreover, it can be a great resource to better conduct further study of other sciaenids.http://www.sciencedirect.com/science/article/pii/S2468550X21000691Miiuy croakerChromosomal assemblyGenome annotationGenome evolutionPhylogenetic |
| spellingShingle | Tianjun Xu Ye Li Weiwei Zheng Yuena Sun A chromosome-level genome assembly of the miiuy croaker (Miichthys miiuy) using nanopore sequencing and Hi-C Aquaculture and Fisheries Miiuy croaker Chromosomal assembly Genome annotation Genome evolution Phylogenetic |
| title | A chromosome-level genome assembly of the miiuy croaker (Miichthys miiuy) using nanopore sequencing and Hi-C |
| title_full | A chromosome-level genome assembly of the miiuy croaker (Miichthys miiuy) using nanopore sequencing and Hi-C |
| title_fullStr | A chromosome-level genome assembly of the miiuy croaker (Miichthys miiuy) using nanopore sequencing and Hi-C |
| title_full_unstemmed | A chromosome-level genome assembly of the miiuy croaker (Miichthys miiuy) using nanopore sequencing and Hi-C |
| title_short | A chromosome-level genome assembly of the miiuy croaker (Miichthys miiuy) using nanopore sequencing and Hi-C |
| title_sort | chromosome level genome assembly of the miiuy croaker miichthys miiuy using nanopore sequencing and hi c |
| topic | Miiuy croaker Chromosomal assembly Genome annotation Genome evolution Phylogenetic |
| url | http://www.sciencedirect.com/science/article/pii/S2468550X21000691 |
| work_keys_str_mv | AT tianjunxu achromosomelevelgenomeassemblyofthemiiuycroakermiichthysmiiuyusingnanoporesequencingandhic AT yeli achromosomelevelgenomeassemblyofthemiiuycroakermiichthysmiiuyusingnanoporesequencingandhic AT weiweizheng achromosomelevelgenomeassemblyofthemiiuycroakermiichthysmiiuyusingnanoporesequencingandhic AT yuenasun achromosomelevelgenomeassemblyofthemiiuycroakermiichthysmiiuyusingnanoporesequencingandhic AT tianjunxu chromosomelevelgenomeassemblyofthemiiuycroakermiichthysmiiuyusingnanoporesequencingandhic AT yeli chromosomelevelgenomeassemblyofthemiiuycroakermiichthysmiiuyusingnanoporesequencingandhic AT weiweizheng chromosomelevelgenomeassemblyofthemiiuycroakermiichthysmiiuyusingnanoporesequencingandhic AT yuenasun chromosomelevelgenomeassemblyofthemiiuycroakermiichthysmiiuyusingnanoporesequencingandhic |