Gromita: A Fully Integrated Graphical user Interface to Gromacs 4
Gromita is a fully integrated and efficient graphical user interface (GUI) to the recently updated molecular dynamics suite Gromacs, version 4. Gromita is a cross-platform, perl/tcl-tk based, interactive front end designed to break the command line barrier and introduce a new user-friendly environme...
| Main Authors: | , , |
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| Format: | Article |
| Language: | English |
| Published: |
SAGE Publishing
2009-01-01
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| Series: | Bioinformatics and Biology Insights |
| Online Access: | https://doi.org/10.4137/BBI.S3207 |
| _version_ | 1818884073145237504 |
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| author | Diamantis Sellis Dimitrios Vlachakis Metaxia Vlassi |
| author_facet | Diamantis Sellis Dimitrios Vlachakis Metaxia Vlassi |
| author_sort | Diamantis Sellis |
| collection | DOAJ |
| description | Gromita is a fully integrated and efficient graphical user interface (GUI) to the recently updated molecular dynamics suite Gromacs, version 4. Gromita is a cross-platform, perl/tcl-tk based, interactive front end designed to break the command line barrier and introduce a new user-friendly environment to run molecular dynamics simulations through Gromacs. Our GUI features a novel workflow interface that guides the user through each logical step of the molecular dynamics setup process, making it accessible to both advanced and novice users. This tool provides a seamless interface to the Gromacs package, while providing enhanced functionality by speeding up and simplifying the task of setting up molecular dynamics simulations of biological systems. Gromita can be freely downloaded from http://bio.demokritos.gr/gromita/ . |
| first_indexed | 2024-12-19T15:43:45Z |
| format | Article |
| id | doaj.art-c1080d9b59f243198dd256ed7618e0df |
| institution | Directory Open Access Journal |
| issn | 1177-9322 |
| language | English |
| last_indexed | 2024-12-19T15:43:45Z |
| publishDate | 2009-01-01 |
| publisher | SAGE Publishing |
| record_format | Article |
| series | Bioinformatics and Biology Insights |
| spelling | doaj.art-c1080d9b59f243198dd256ed7618e0df2022-12-21T20:15:24ZengSAGE PublishingBioinformatics and Biology Insights1177-93222009-01-01310.4137/BBI.S3207Gromita: A Fully Integrated Graphical user Interface to Gromacs 4Diamantis Sellis0Dimitrios Vlachakis1Metaxia Vlassi2Institute of Biology, National Centre for Scientific Research “Demokritos”, 15310 Ag. Paraskevi Attikis, Greece.Institute of Biology, National Centre for Scientific Research “Demokritos”, 15310 Ag. Paraskevi Attikis, Greece.Institute of Biology, National Centre for Scientific Research “Demokritos”, 15310 Ag. Paraskevi Attikis, Greece.Gromita is a fully integrated and efficient graphical user interface (GUI) to the recently updated molecular dynamics suite Gromacs, version 4. Gromita is a cross-platform, perl/tcl-tk based, interactive front end designed to break the command line barrier and introduce a new user-friendly environment to run molecular dynamics simulations through Gromacs. Our GUI features a novel workflow interface that guides the user through each logical step of the molecular dynamics setup process, making it accessible to both advanced and novice users. This tool provides a seamless interface to the Gromacs package, while providing enhanced functionality by speeding up and simplifying the task of setting up molecular dynamics simulations of biological systems. Gromita can be freely downloaded from http://bio.demokritos.gr/gromita/ .https://doi.org/10.4137/BBI.S3207 |
| spellingShingle | Diamantis Sellis Dimitrios Vlachakis Metaxia Vlassi Gromita: A Fully Integrated Graphical user Interface to Gromacs 4 Bioinformatics and Biology Insights |
| title | Gromita: A Fully Integrated Graphical user Interface to Gromacs 4 |
| title_full | Gromita: A Fully Integrated Graphical user Interface to Gromacs 4 |
| title_fullStr | Gromita: A Fully Integrated Graphical user Interface to Gromacs 4 |
| title_full_unstemmed | Gromita: A Fully Integrated Graphical user Interface to Gromacs 4 |
| title_short | Gromita: A Fully Integrated Graphical user Interface to Gromacs 4 |
| title_sort | gromita a fully integrated graphical user interface to gromacs 4 |
| url | https://doi.org/10.4137/BBI.S3207 |
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