Evaluating the systematic position of Ehretia asperula Zoll. & Moritzi based on ITS1, matK and trnL-trnF DNA sequences
Ehretia asperula, popular as a medicinal herb that has potential on cancer treatment, has a limited research about its phylogeny relationships. With many innovative advancements in molecular biology, it is more easy and reliable to identify the taxonomic position of a species by molecular markers-...
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| Format: | Article |
| Language: | English |
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Vietnam Ministry of Science and Technology
2017-12-01
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| Series: | Vietnam Journal of Science, Technology and Engineering |
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| Online Access: | https://vietnamscience.vjst.vn/index.php/vjste/article/view/274 |
| _version_ | 1828047932197175296 |
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| author | Thuy Linh Nguyen Thi Hang Pham Van Truong Do Thi Thu Hue Huynh |
| author_facet | Thuy Linh Nguyen Thi Hang Pham Van Truong Do Thi Thu Hue Huynh |
| author_sort | Thuy Linh Nguyen |
| collection | DOAJ |
| description |
Ehretia asperula, popular as a medicinal herb that has potential on cancer treatment, has a limited research about its phylogeny relationships. With many innovative advancements in molecular biology, it is more easy and reliable to identify the taxonomic position of a species by molecular markers- DNA barcode. In this study, we used three different markers, ITS1, trnL-trnF, and matK, to evaluate E. asperula’s systematic position. Based on ITS1 sequence, E. asperula belongs to clade Ehretia I and is a close relative of E. resinosa. Moreover, ITS1 was suggested to be use as a suitable DNA barcode in order to identify E. asperula.
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| first_indexed | 2024-04-10T18:49:38Z |
| format | Article |
| id | doaj.art-c11ff5a6b6b04f8f863bf72f9d5e0d6b |
| institution | Directory Open Access Journal |
| issn | 2525-2461 2615-9937 |
| language | English |
| last_indexed | 2024-04-10T18:49:38Z |
| publishDate | 2017-12-01 |
| publisher | Vietnam Ministry of Science and Technology |
| record_format | Article |
| series | Vietnam Journal of Science, Technology and Engineering |
| spelling | doaj.art-c11ff5a6b6b04f8f863bf72f9d5e0d6b2023-02-01T08:20:49ZengVietnam Ministry of Science and TechnologyVietnam Journal of Science, Technology and Engineering2525-24612615-99372017-12-0159410.31276/VJSTE.59(4).61Evaluating the systematic position of Ehretia asperula Zoll. & Moritzi based on ITS1, matK and trnL-trnF DNA sequencesThuy Linh Nguyen0Thi Hang Pham1Van Truong Do2Thi Thu Hue Huynh3Institute of Genome Research, Vietnam Academy of Science and TechnologyInstitute of Genome Research, Vietnam Academy of Science and TechnologyVietnam National Museum of Nature, Vietnam Academy of Science and TechnologyInstitute of Genome Research, Vietnam Academy of Science and Technology Ehretia asperula, popular as a medicinal herb that has potential on cancer treatment, has a limited research about its phylogeny relationships. With many innovative advancements in molecular biology, it is more easy and reliable to identify the taxonomic position of a species by molecular markers- DNA barcode. In this study, we used three different markers, ITS1, trnL-trnF, and matK, to evaluate E. asperula’s systematic position. Based on ITS1 sequence, E. asperula belongs to clade Ehretia I and is a close relative of E. resinosa. Moreover, ITS1 was suggested to be use as a suitable DNA barcode in order to identify E. asperula. https://vietnamscience.vjst.vn/index.php/vjste/article/view/274Ehretia asperulaITS1matKphylogeneticstrnL-trnF |
| spellingShingle | Thuy Linh Nguyen Thi Hang Pham Van Truong Do Thi Thu Hue Huynh Evaluating the systematic position of Ehretia asperula Zoll. & Moritzi based on ITS1, matK and trnL-trnF DNA sequences Vietnam Journal of Science, Technology and Engineering Ehretia asperula ITS1 matK phylogenetics trnL-trnF |
| title | Evaluating the systematic position of Ehretia asperula Zoll. & Moritzi based on ITS1, matK and trnL-trnF DNA sequences |
| title_full | Evaluating the systematic position of Ehretia asperula Zoll. & Moritzi based on ITS1, matK and trnL-trnF DNA sequences |
| title_fullStr | Evaluating the systematic position of Ehretia asperula Zoll. & Moritzi based on ITS1, matK and trnL-trnF DNA sequences |
| title_full_unstemmed | Evaluating the systematic position of Ehretia asperula Zoll. & Moritzi based on ITS1, matK and trnL-trnF DNA sequences |
| title_short | Evaluating the systematic position of Ehretia asperula Zoll. & Moritzi based on ITS1, matK and trnL-trnF DNA sequences |
| title_sort | evaluating the systematic position of ehretia asperula zoll moritzi based on its1 matk and trnl trnf dna sequences |
| topic | Ehretia asperula ITS1 matK phylogenetics trnL-trnF |
| url | https://vietnamscience.vjst.vn/index.php/vjste/article/view/274 |
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