Selective depletion of rRNA enables whole transcriptome profiling of archival fixed tissue.
We report a method for Selective Depletion of abundant RNA (SDRNA) species from Human total RNA isolated from formalin-fixed, paraffin-embedded (FFPE) tissue, here demonstrating removal of ribosomal and mitochondrial transcripts from clinical FFPE tissue RNA archived up to 20 years. Importantly, SDR...
Main Authors: | John D Morlan, Kunbin Qu, Dominick V Sinicropi |
---|---|
Format: | Article |
Language: | English |
Published: |
Public Library of Science (PLoS)
2012-01-01
|
Series: | PLoS ONE |
Online Access: | http://europepmc.org/articles/PMC3416766?pdf=render |
Similar Items
-
Whole transcriptome RNA-Seq analysis of breast cancer recurrence risk using formalin-fixed paraffin-embedded tumor tissue.
by: Dominick Sinicropi, et al.
Published: (2012-01-01) -
mRNA-seq whole transcriptome profiling of fresh frozen versus archived fixed tissues
by: Noa Bossel Ben-Moshe, et al.
Published: (2018-05-01) -
Targeted rRNA depletion enables efficient mRNA sequencing in diverse bacterial species and complex co-cultures
by: Kellie A. Heom, et al.
Published: (2023-12-01) -
Improving an rRNA depletion protocol with statistical design of experiments
by: Benjamin M. David, et al.
Published: (2023-02-01) -
Comparison of rRNA depletion methods for efficient bacterial mRNA sequencing
by: Anika Wahl, et al.
Published: (2022-04-01)