The complete chloroplast genome sequence of the plant Euonymus fortunei (Celastraceae)
Chloroplast (cp) genome sequences become a useful popular tool for population and phylogeny in recent reports. Here, the complete cp genome of the Euonymus fortunei has been reconstructed from the whole-genome Illumina sequencing data. The circular genome is 157,639 bp in size, and comprises a pair...
| Main Authors: | , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Taylor & Francis Group
2018-07-01
|
| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2018.1473724 |
| _version_ | 1797640715619008512 |
|---|---|
| author | Wenping Hua Chen Chen |
| author_facet | Wenping Hua Chen Chen |
| author_sort | Wenping Hua |
| collection | DOAJ |
| description | Chloroplast (cp) genome sequences become a useful popular tool for population and phylogeny in recent reports. Here, the complete cp genome of the Euonymus fortunei has been reconstructed from the whole-genome Illumina sequencing data. The circular genome is 157,639 bp in size, and comprises a pair of inverted repeat (IR) regions of 26,668 bp each, a large single copy (LSC) region of 85,956 bp and a small single copy (SSC) region of 18,347 bp. The total GC content is 37.2%, while the corresponding values of the LSC, SSC, and IR region are 35.1%, 31.7%, and 42.7%, respectively. The cp genome contains 126 genes, including 89 protein-coding genes, eight ribosomal RNA genes, and 29 transfer RNA genes and one pseudogene. The maximum-likelihood phylogenetic analysis showed a strong sister relationship with Euonymus japonicus in Celastraceae. Our findings provide a foundation for further investigation of cp genome evolution in E. fortunei and other higher plants. |
| first_indexed | 2024-03-11T13:34:43Z |
| format | Article |
| id | doaj.art-c20efb4e4d474b7f96abf715c9b8317d |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:34:43Z |
| publishDate | 2018-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-c20efb4e4d474b7f96abf715c9b8317d2023-11-02T15:57:24ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592018-07-013263763910.1080/23802359.2018.14737241473724The complete chloroplast genome sequence of the plant Euonymus fortunei (Celastraceae)Wenping Hua0Chen Chen1Shaanxi XueQian Normal UniversityInstitute of Botany of Shaanxi ProvinceChloroplast (cp) genome sequences become a useful popular tool for population and phylogeny in recent reports. Here, the complete cp genome of the Euonymus fortunei has been reconstructed from the whole-genome Illumina sequencing data. The circular genome is 157,639 bp in size, and comprises a pair of inverted repeat (IR) regions of 26,668 bp each, a large single copy (LSC) region of 85,956 bp and a small single copy (SSC) region of 18,347 bp. The total GC content is 37.2%, while the corresponding values of the LSC, SSC, and IR region are 35.1%, 31.7%, and 42.7%, respectively. The cp genome contains 126 genes, including 89 protein-coding genes, eight ribosomal RNA genes, and 29 transfer RNA genes and one pseudogene. The maximum-likelihood phylogenetic analysis showed a strong sister relationship with Euonymus japonicus in Celastraceae. Our findings provide a foundation for further investigation of cp genome evolution in E. fortunei and other higher plants.http://dx.doi.org/10.1080/23802359.2018.1473724euonymus fortuneiillumina sequencingchloroplast genome |
| spellingShingle | Wenping Hua Chen Chen The complete chloroplast genome sequence of the plant Euonymus fortunei (Celastraceae) Mitochondrial DNA. Part B. Resources euonymus fortunei illumina sequencing chloroplast genome |
| title | The complete chloroplast genome sequence of the plant Euonymus fortunei (Celastraceae) |
| title_full | The complete chloroplast genome sequence of the plant Euonymus fortunei (Celastraceae) |
| title_fullStr | The complete chloroplast genome sequence of the plant Euonymus fortunei (Celastraceae) |
| title_full_unstemmed | The complete chloroplast genome sequence of the plant Euonymus fortunei (Celastraceae) |
| title_short | The complete chloroplast genome sequence of the plant Euonymus fortunei (Celastraceae) |
| title_sort | complete chloroplast genome sequence of the plant euonymus fortunei celastraceae |
| topic | euonymus fortunei illumina sequencing chloroplast genome |
| url | http://dx.doi.org/10.1080/23802359.2018.1473724 |
| work_keys_str_mv | AT wenpinghua thecompletechloroplastgenomesequenceoftheplanteuonymusfortuneicelastraceae AT chenchen thecompletechloroplastgenomesequenceoftheplanteuonymusfortuneicelastraceae AT wenpinghua completechloroplastgenomesequenceoftheplanteuonymusfortuneicelastraceae AT chenchen completechloroplastgenomesequenceoftheplanteuonymusfortuneicelastraceae |