All Populations Matter: Conservation Genomics of Australia’s Iconic Purple Wattle, <i>Acacia purpureopetala</i>
Maximising genetic diversity in conservation efforts can help to increase the chances of survival of a species amidst the turbulence of the anthropogenic age. Here, we define the distribution and extent of genomic diversity across the range of the iconic but threatened <i>Acacia purpureopetala...
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| Format: | Article |
| Language: | English |
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MDPI AG
2021-03-01
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| Series: | Diversity |
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| Online Access: | https://www.mdpi.com/1424-2818/13/4/139 |
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| author | Marlien M. van der Merwe Jia-Yee S. Yap Peter D. Wilson Helen T. Murphy Andrew Ford |
| author_facet | Marlien M. van der Merwe Jia-Yee S. Yap Peter D. Wilson Helen T. Murphy Andrew Ford |
| author_sort | Marlien M. van der Merwe |
| collection | DOAJ |
| description | Maximising genetic diversity in conservation efforts can help to increase the chances of survival of a species amidst the turbulence of the anthropogenic age. Here, we define the distribution and extent of genomic diversity across the range of the iconic but threatened <i>Acacia purpureopetala</i>, a beautiful sprawling shrub with mauve flowers, restricted to a few disjunct populations in far north Queensland, Australia. Seed production is poor and germination sporadic, but the species occurs in abundance at some field sites. While several thousands of SNP markers were recovered, comparable to other <i>Acacia</i> species, very low levels of heterozygosity and allelic variation suggested inbreeding. Limited dispersal most likely contributed towards the high levels of divergence amongst field sites and, using a generalised dissimilarity modelling framework amongst environmental, spatial and floristic data, spatial distance was found to be the strongest factor explaining the current distribution of genetic diversity. We illustrate how population genomic data can be utilised to design a collecting strategy for a germplasm conservation collection that optimises genetic diversity. For this species, inclusion of all field sites will capture maximum genetic diversity for both in situ and ex situ conservation. Assisted cross pollination, within and between field sites and genetically structured groups, is recommended to enhance heterozygosity particularly at the most disjunct sites and further fragmentation should be discouraged to avoid loss of genetic connectivity. |
| first_indexed | 2024-03-10T12:56:29Z |
| format | Article |
| id | doaj.art-c217bf69faaa4a0681abaf664c1655dd |
| institution | Directory Open Access Journal |
| issn | 1424-2818 |
| language | English |
| last_indexed | 2024-03-10T12:56:29Z |
| publishDate | 2021-03-01 |
| publisher | MDPI AG |
| record_format | Article |
| series | Diversity |
| spelling | doaj.art-c217bf69faaa4a0681abaf664c1655dd2023-11-21T11:55:40ZengMDPI AGDiversity1424-28182021-03-0113413910.3390/d13040139All Populations Matter: Conservation Genomics of Australia’s Iconic Purple Wattle, <i>Acacia purpureopetala</i>Marlien M. van der Merwe0Jia-Yee S. Yap1Peter D. Wilson2Helen T. Murphy3Andrew Ford4Research Centre for Ecosystem Resilience, Royal Botanic Garden Sydney, Mrs Macquaries Road, Sydney, NSW 2000, AustraliaResearch Centre for Ecosystem Resilience, Royal Botanic Garden Sydney, Mrs Macquaries Road, Sydney, NSW 2000, AustraliaResearch Centre for Ecosystem Resilience, Royal Botanic Garden Sydney, Mrs Macquaries Road, Sydney, NSW 2000, AustraliaCSIRO Land and Water, Tropical Forest Research Centre, Maunds Road, Atherton, QLD 4883, AustraliaCSIRO Land and Water, Tropical Forest Research Centre, Maunds Road, Atherton, QLD 4883, AustraliaMaximising genetic diversity in conservation efforts can help to increase the chances of survival of a species amidst the turbulence of the anthropogenic age. Here, we define the distribution and extent of genomic diversity across the range of the iconic but threatened <i>Acacia purpureopetala</i>, a beautiful sprawling shrub with mauve flowers, restricted to a few disjunct populations in far north Queensland, Australia. Seed production is poor and germination sporadic, but the species occurs in abundance at some field sites. While several thousands of SNP markers were recovered, comparable to other <i>Acacia</i> species, very low levels of heterozygosity and allelic variation suggested inbreeding. Limited dispersal most likely contributed towards the high levels of divergence amongst field sites and, using a generalised dissimilarity modelling framework amongst environmental, spatial and floristic data, spatial distance was found to be the strongest factor explaining the current distribution of genetic diversity. We illustrate how population genomic data can be utilised to design a collecting strategy for a germplasm conservation collection that optimises genetic diversity. For this species, inclusion of all field sites will capture maximum genetic diversity for both in situ and ex situ conservation. Assisted cross pollination, within and between field sites and genetically structured groups, is recommended to enhance heterozygosity particularly at the most disjunct sites and further fragmentation should be discouraged to avoid loss of genetic connectivity.https://www.mdpi.com/1424-2818/13/4/139low heterozygositySNP markersfragmentationmixed mating systemgenetic driftoptimum germplasm conservation collection |
| spellingShingle | Marlien M. van der Merwe Jia-Yee S. Yap Peter D. Wilson Helen T. Murphy Andrew Ford All Populations Matter: Conservation Genomics of Australia’s Iconic Purple Wattle, <i>Acacia purpureopetala</i> Diversity low heterozygosity SNP markers fragmentation mixed mating system genetic drift optimum germplasm conservation collection |
| title | All Populations Matter: Conservation Genomics of Australia’s Iconic Purple Wattle, <i>Acacia purpureopetala</i> |
| title_full | All Populations Matter: Conservation Genomics of Australia’s Iconic Purple Wattle, <i>Acacia purpureopetala</i> |
| title_fullStr | All Populations Matter: Conservation Genomics of Australia’s Iconic Purple Wattle, <i>Acacia purpureopetala</i> |
| title_full_unstemmed | All Populations Matter: Conservation Genomics of Australia’s Iconic Purple Wattle, <i>Acacia purpureopetala</i> |
| title_short | All Populations Matter: Conservation Genomics of Australia’s Iconic Purple Wattle, <i>Acacia purpureopetala</i> |
| title_sort | all populations matter conservation genomics of australia s iconic purple wattle i acacia purpureopetala i |
| topic | low heterozygosity SNP markers fragmentation mixed mating system genetic drift optimum germplasm conservation collection |
| url | https://www.mdpi.com/1424-2818/13/4/139 |
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