RNA variant identification discrepancy among splice-aware alignment algorithms.
Next-generation sequencing (NGS) techniques have been generating various molecular maps, including transcriptomes via RNA-seq. Although the primary purpose of RNA-seq is to quantify the expression level of known genes, RNA variants are also identifiable. However, care must be taken to account for RN...
Main Authors: | Ji Hyung Hong, Yoon Ho Ko, Keunsoo Kang |
---|---|
Format: | Article |
Language: | English |
Published: |
Public Library of Science (PLoS)
2018-01-01
|
Series: | PLoS ONE |
Online Access: | http://europepmc.org/articles/PMC6072070?pdf=render |
Similar Items
-
RNA-seq data of invasive ductal carcinoma and adjacent normal tissues from a Korean patient with breast cancer
by: Ji Hyung Hong, et al.
Published: (2018-06-01) -
SplicedFamAlign: CDS-to-gene spliced alignment and identification of transcript orthology groups
by: Safa Jammali, et al.
Published: (2019-03-01) -
SPA: a probabilistic algorithm for spliced alignment.
Published: (2006-04-01) -
SPA: a probabilistic algorithm for spliced alignment.
by: Erik van Nimwegen, et al.
Published: (2006-04-01) -
Identification of potential proteins translated from circular RNA splice variants
by: Aniruddha Das, et al.
Published: (2023-03-01)