Characterization of the complete chloroplast genome of Viburnum farreri (Adoxaceae)
The whole chloroplast (cp) genome sequence of Viburnum farreri has been characterized from Illumina pair-end sequencing. The complete cp genome was 158,516 bp in length, containing a large single-copy region (LSC) of 86,990 bp and a small single-copy region (SSC) of 18,502 bp, which were separated b...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2020-04-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2020.1748543 |
| _version_ | 1797639313263951872 |
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| author | Yuemei Zhao Jingzhi Pan |
| author_facet | Yuemei Zhao Jingzhi Pan |
| author_sort | Yuemei Zhao |
| collection | DOAJ |
| description | The whole chloroplast (cp) genome sequence of Viburnum farreri has been characterized from Illumina pair-end sequencing. The complete cp genome was 158,516 bp in length, containing a large single-copy region (LSC) of 86,990 bp and a small single-copy region (SSC) of 18,502 bp, which were separated by a pair of inverted repeat (IR) regions of 26,512 bp. The genome contained 130 genes, including 85 protein-coding genes, 37 tRNA genes, and 8 ribosomal RNA genes (4 rRNA species). Most genes occur as a single copy, while 17 gene species are duplicated. Phylogenetic analysis revealed that V. farreri is closely related to the species of V. brachybotryum. |
| first_indexed | 2024-03-11T13:15:03Z |
| format | Article |
| id | doaj.art-c22d4a7ba87743dcbe77355f06902309 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:15:03Z |
| publishDate | 2020-04-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-c22d4a7ba87743dcbe77355f069023092023-11-03T13:50:19ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-04-01521693169410.1080/23802359.2020.17485431748543Characterization of the complete chloroplast genome of Viburnum farreri (Adoxaceae)Yuemei Zhao0Jingzhi Pan1Guizhou Education UniversityJilin Engineering Normal UniversityThe whole chloroplast (cp) genome sequence of Viburnum farreri has been characterized from Illumina pair-end sequencing. The complete cp genome was 158,516 bp in length, containing a large single-copy region (LSC) of 86,990 bp and a small single-copy region (SSC) of 18,502 bp, which were separated by a pair of inverted repeat (IR) regions of 26,512 bp. The genome contained 130 genes, including 85 protein-coding genes, 37 tRNA genes, and 8 ribosomal RNA genes (4 rRNA species). Most genes occur as a single copy, while 17 gene species are duplicated. Phylogenetic analysis revealed that V. farreri is closely related to the species of V. brachybotryum.http://dx.doi.org/10.1080/23802359.2020.1748543viburnum farrerichloroplastillumina sequencingphylogenetic analysis |
| spellingShingle | Yuemei Zhao Jingzhi Pan Characterization of the complete chloroplast genome of Viburnum farreri (Adoxaceae) Mitochondrial DNA. Part B. Resources viburnum farreri chloroplast illumina sequencing phylogenetic analysis |
| title | Characterization of the complete chloroplast genome of Viburnum farreri (Adoxaceae) |
| title_full | Characterization of the complete chloroplast genome of Viburnum farreri (Adoxaceae) |
| title_fullStr | Characterization of the complete chloroplast genome of Viburnum farreri (Adoxaceae) |
| title_full_unstemmed | Characterization of the complete chloroplast genome of Viburnum farreri (Adoxaceae) |
| title_short | Characterization of the complete chloroplast genome of Viburnum farreri (Adoxaceae) |
| title_sort | characterization of the complete chloroplast genome of viburnum farreri adoxaceae |
| topic | viburnum farreri chloroplast illumina sequencing phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2020.1748543 |
| work_keys_str_mv | AT yuemeizhao characterizationofthecompletechloroplastgenomeofviburnumfarreriadoxaceae AT jingzhipan characterizationofthecompletechloroplastgenomeofviburnumfarreriadoxaceae |