Characterization of the complete chloroplast genome of a Chinese endangered species Cymbidium mannii
Cymbidium mannii is an endangered species belonging to the first ranking in protection category in China with important ornamental value and breeding value. This study used Illumina high-throughput sequencing technologies to sequence and analyze the complete chloroplast genome of C. mannii. The geno...
| Main Authors: | , , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2020-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2020.1810159 |
| _version_ | 1797639100992323584 |
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| author | Yuying Wang Longjie Cheng Yiran Zhao Yefang Li Fengmei He Zhilin Li |
| author_facet | Yuying Wang Longjie Cheng Yiran Zhao Yefang Li Fengmei He Zhilin Li |
| author_sort | Yuying Wang |
| collection | DOAJ |
| description | Cymbidium mannii is an endangered species belonging to the first ranking in protection category in China with important ornamental value and breeding value. This study used Illumina high-throughput sequencing technologies to sequence and analyze the complete chloroplast genome of C. mannii. The genome features of C. mannii and the phylogenetic relationships among Orchidaceae species were reported and established. The complete chloroplast genome is 152,544 bp in length, consisting of a pair of inverse duplication regions 25,357 bp, a large single-copy region 86,014 bp and a small single-copy region 15,816 bp. The entire genome contains 74 mRNA genes, 30 tRNA genes and 4 rRNA genes. The phylogenetic tree of 23 Orchidaceae species revealed C. mannii is more closely related to Cymbidium aloifolium. |
| first_indexed | 2024-03-11T13:13:00Z |
| format | Article |
| id | doaj.art-c2438f9c0ff8460981a439cf129a9ece |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:13:00Z |
| publishDate | 2020-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-c2438f9c0ff8460981a439cf129a9ece2023-11-03T14:00:32ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-07-01533199320010.1080/23802359.2020.18101591810159Characterization of the complete chloroplast genome of a Chinese endangered species Cymbidium manniiYuying Wang0Longjie Cheng1Yiran Zhao2Yefang Li3Fengmei He4Zhilin Li5College of Horticulture and Landscape, Yunnan Agricultural UniversityCollege of Horticulture and Landscape, Yunnan Agricultural UniversityCollege of Horticulture and Landscape, Yunnan Agricultural UniversityCollege of Horticulture and Landscape, Yunnan Agricultural UniversityCollege of Horticulture and Landscape, Yunnan Agricultural UniversityCollege of Horticulture and Landscape, Yunnan Agricultural UniversityCymbidium mannii is an endangered species belonging to the first ranking in protection category in China with important ornamental value and breeding value. This study used Illumina high-throughput sequencing technologies to sequence and analyze the complete chloroplast genome of C. mannii. The genome features of C. mannii and the phylogenetic relationships among Orchidaceae species were reported and established. The complete chloroplast genome is 152,544 bp in length, consisting of a pair of inverse duplication regions 25,357 bp, a large single-copy region 86,014 bp and a small single-copy region 15,816 bp. The entire genome contains 74 mRNA genes, 30 tRNA genes and 4 rRNA genes. The phylogenetic tree of 23 Orchidaceae species revealed C. mannii is more closely related to Cymbidium aloifolium.http://dx.doi.org/10.1080/23802359.2020.1810159cymbidium manniichloroplast genomeendangered speciesphylogenetic analysis |
| spellingShingle | Yuying Wang Longjie Cheng Yiran Zhao Yefang Li Fengmei He Zhilin Li Characterization of the complete chloroplast genome of a Chinese endangered species Cymbidium mannii Mitochondrial DNA. Part B. Resources cymbidium mannii chloroplast genome endangered species phylogenetic analysis |
| title | Characterization of the complete chloroplast genome of a Chinese endangered species Cymbidium mannii |
| title_full | Characterization of the complete chloroplast genome of a Chinese endangered species Cymbidium mannii |
| title_fullStr | Characterization of the complete chloroplast genome of a Chinese endangered species Cymbidium mannii |
| title_full_unstemmed | Characterization of the complete chloroplast genome of a Chinese endangered species Cymbidium mannii |
| title_short | Characterization of the complete chloroplast genome of a Chinese endangered species Cymbidium mannii |
| title_sort | characterization of the complete chloroplast genome of a chinese endangered species cymbidium mannii |
| topic | cymbidium mannii chloroplast genome endangered species phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2020.1810159 |
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