The genomic landscape of reference genomes of cultivated human gut bacteria
Here, the authors present an expanded version of the Cultivated Genome Reference (CGR), termed CGR2, a catalog that includes 3324 high-quality draft genomes based on gut bacterial isolates from Chinese individuals, and classifies 527 species from 8 phyla, including 179 previously unidentified specie...
| Main Authors: | , , , , , , , , , , , , , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Nature Portfolio
2023-03-01
|
| Series: | Nature Communications |
| Online Access: | https://doi.org/10.1038/s41467-023-37396-x |
| _version_ | 1797859909857968128 |
|---|---|
| author | Xiaoqian Lin Tongyuan Hu Jianwei Chen Hewei Liang Jianwei Zhou Zhinan Wu Chen Ye Xin Jin Xun Xu Wenwei Zhang Xiaohuan Jing Tao Yang Jian Wang Huanming Yang Karsten Kristiansen Liang Xiao Yuanqiang Zou |
| author_facet | Xiaoqian Lin Tongyuan Hu Jianwei Chen Hewei Liang Jianwei Zhou Zhinan Wu Chen Ye Xin Jin Xun Xu Wenwei Zhang Xiaohuan Jing Tao Yang Jian Wang Huanming Yang Karsten Kristiansen Liang Xiao Yuanqiang Zou |
| author_sort | Xiaoqian Lin |
| collection | DOAJ |
| description | Here, the authors present an expanded version of the Cultivated Genome Reference (CGR), termed CGR2, a catalog that includes 3324 high-quality draft genomes based on gut bacterial isolates from Chinese individuals, and classifies 527 species from 8 phyla, including 179 previously unidentified species, and provides information of secondary metabolite biosynthetic gene clusters and gut phage-bacteria interactions. |
| first_indexed | 2024-04-09T21:37:12Z |
| format | Article |
| id | doaj.art-c25ab2f613564b6cb5b759fd16069dca |
| institution | Directory Open Access Journal |
| issn | 2041-1723 |
| language | English |
| last_indexed | 2024-04-09T21:37:12Z |
| publishDate | 2023-03-01 |
| publisher | Nature Portfolio |
| record_format | Article |
| series | Nature Communications |
| spelling | doaj.art-c25ab2f613564b6cb5b759fd16069dca2023-03-26T11:14:17ZengNature PortfolioNature Communications2041-17232023-03-0114111110.1038/s41467-023-37396-xThe genomic landscape of reference genomes of cultivated human gut bacteriaXiaoqian Lin0Tongyuan Hu1Jianwei Chen2Hewei Liang3Jianwei Zhou4Zhinan Wu5Chen Ye6Xin Jin7Xun Xu8Wenwei Zhang9Xiaohuan Jing10Tao Yang11Jian Wang12Huanming Yang13Karsten Kristiansen14Liang Xiao15Yuanqiang Zou16BGI-ShenzhenBGI-ShenzhenBGI-ShenzhenBGI-ShenzhenQingdao-Europe Advanced Institute for Life Sciences, BGI-ShenzhenBGI-ShenzhenBGI-ShenzhenBGI-ShenzhenBGI-ShenzhenBGI-ShenzhenChina National GeneBank, BGI-ShenzhenChina National GeneBank, BGI-ShenzhenBGI-ShenzhenBGI-ShenzhenBGI-ShenzhenBGI-ShenzhenBGI-ShenzhenHere, the authors present an expanded version of the Cultivated Genome Reference (CGR), termed CGR2, a catalog that includes 3324 high-quality draft genomes based on gut bacterial isolates from Chinese individuals, and classifies 527 species from 8 phyla, including 179 previously unidentified species, and provides information of secondary metabolite biosynthetic gene clusters and gut phage-bacteria interactions.https://doi.org/10.1038/s41467-023-37396-x |
| spellingShingle | Xiaoqian Lin Tongyuan Hu Jianwei Chen Hewei Liang Jianwei Zhou Zhinan Wu Chen Ye Xin Jin Xun Xu Wenwei Zhang Xiaohuan Jing Tao Yang Jian Wang Huanming Yang Karsten Kristiansen Liang Xiao Yuanqiang Zou The genomic landscape of reference genomes of cultivated human gut bacteria Nature Communications |
| title | The genomic landscape of reference genomes of cultivated human gut bacteria |
| title_full | The genomic landscape of reference genomes of cultivated human gut bacteria |
| title_fullStr | The genomic landscape of reference genomes of cultivated human gut bacteria |
| title_full_unstemmed | The genomic landscape of reference genomes of cultivated human gut bacteria |
| title_short | The genomic landscape of reference genomes of cultivated human gut bacteria |
| title_sort | genomic landscape of reference genomes of cultivated human gut bacteria |
| url | https://doi.org/10.1038/s41467-023-37396-x |
| work_keys_str_mv | AT xiaoqianlin thegenomiclandscapeofreferencegenomesofcultivatedhumangutbacteria AT tongyuanhu thegenomiclandscapeofreferencegenomesofcultivatedhumangutbacteria AT jianweichen thegenomiclandscapeofreferencegenomesofcultivatedhumangutbacteria AT heweiliang thegenomiclandscapeofreferencegenomesofcultivatedhumangutbacteria AT jianweizhou thegenomiclandscapeofreferencegenomesofcultivatedhumangutbacteria AT zhinanwu thegenomiclandscapeofreferencegenomesofcultivatedhumangutbacteria AT chenye thegenomiclandscapeofreferencegenomesofcultivatedhumangutbacteria AT xinjin thegenomiclandscapeofreferencegenomesofcultivatedhumangutbacteria AT xunxu thegenomiclandscapeofreferencegenomesofcultivatedhumangutbacteria AT wenweizhang thegenomiclandscapeofreferencegenomesofcultivatedhumangutbacteria AT xiaohuanjing thegenomiclandscapeofreferencegenomesofcultivatedhumangutbacteria AT taoyang thegenomiclandscapeofreferencegenomesofcultivatedhumangutbacteria AT jianwang thegenomiclandscapeofreferencegenomesofcultivatedhumangutbacteria AT huanmingyang thegenomiclandscapeofreferencegenomesofcultivatedhumangutbacteria AT karstenkristiansen thegenomiclandscapeofreferencegenomesofcultivatedhumangutbacteria AT liangxiao thegenomiclandscapeofreferencegenomesofcultivatedhumangutbacteria AT yuanqiangzou thegenomiclandscapeofreferencegenomesofcultivatedhumangutbacteria AT xiaoqianlin genomiclandscapeofreferencegenomesofcultivatedhumangutbacteria AT tongyuanhu genomiclandscapeofreferencegenomesofcultivatedhumangutbacteria AT jianweichen genomiclandscapeofreferencegenomesofcultivatedhumangutbacteria AT heweiliang genomiclandscapeofreferencegenomesofcultivatedhumangutbacteria AT jianweizhou genomiclandscapeofreferencegenomesofcultivatedhumangutbacteria AT zhinanwu genomiclandscapeofreferencegenomesofcultivatedhumangutbacteria AT chenye genomiclandscapeofreferencegenomesofcultivatedhumangutbacteria AT xinjin genomiclandscapeofreferencegenomesofcultivatedhumangutbacteria AT xunxu genomiclandscapeofreferencegenomesofcultivatedhumangutbacteria AT wenweizhang genomiclandscapeofreferencegenomesofcultivatedhumangutbacteria AT xiaohuanjing genomiclandscapeofreferencegenomesofcultivatedhumangutbacteria AT taoyang genomiclandscapeofreferencegenomesofcultivatedhumangutbacteria AT jianwang genomiclandscapeofreferencegenomesofcultivatedhumangutbacteria AT huanmingyang genomiclandscapeofreferencegenomesofcultivatedhumangutbacteria AT karstenkristiansen genomiclandscapeofreferencegenomesofcultivatedhumangutbacteria AT liangxiao genomiclandscapeofreferencegenomesofcultivatedhumangutbacteria AT yuanqiangzou genomiclandscapeofreferencegenomesofcultivatedhumangutbacteria |