The complete mitochondrial genome and phylogenetic analysis of Upogebia major (De Haan, 1841)
The complete mitochondrial (mt) genome of Upogebia major (De Haan, 1841) is 16,131 bp in length, comprising 13 protein-coding genes (PCGs), 22 transfer RNA genes, and two ribosomal RNA genes. The nucleotide composition for U. major is 34.3% of A, 36.6% of T, 10.9% of C, and 18.3% of G. All PCGs are...
| Main Authors: | , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Taylor & Francis Group
2021-03-01
|
| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2020.1870898 |
| _version_ | 1797639028284063744 |
|---|---|
| author | Xiaoyue Sun Jun He |
| author_facet | Xiaoyue Sun Jun He |
| author_sort | Xiaoyue Sun |
| collection | DOAJ |
| description | The complete mitochondrial (mt) genome of Upogebia major (De Haan, 1841) is 16,131 bp in length, comprising 13 protein-coding genes (PCGs), 22 transfer RNA genes, and two ribosomal RNA genes. The nucleotide composition for U. major is 34.3% of A, 36.6% of T, 10.9% of C, and 18.3% of G. All PCGs are initiated by ATN codons, except for the cox1 gene, which was not determined. Nine PCGs use a common stop codon of TAA or TAG, the other four end with an incomplete stop codon (a single stop nucleotide T). Phylogenetic tree analysis showed that U. major had a close relationship with the species from the family Thalassinidae. The study will provide an important theoretical basis for further analysis of mt genome evolution and the phylogenetic relationships of the order Decapoda. |
| first_indexed | 2024-03-11T13:10:58Z |
| format | Article |
| id | doaj.art-c2bd9ff5ac9442e99f7af51748e38659 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:10:58Z |
| publishDate | 2021-03-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-c2bd9ff5ac9442e99f7af51748e386592023-11-03T14:08:19ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592021-03-016397097110.1080/23802359.2020.18708981870898The complete mitochondrial genome and phylogenetic analysis of Upogebia major (De Haan, 1841)Xiaoyue Sun0Jun He1College of Life Sciences, Yantai UniversityCollege of Life Sciences, Yantai UniversityThe complete mitochondrial (mt) genome of Upogebia major (De Haan, 1841) is 16,131 bp in length, comprising 13 protein-coding genes (PCGs), 22 transfer RNA genes, and two ribosomal RNA genes. The nucleotide composition for U. major is 34.3% of A, 36.6% of T, 10.9% of C, and 18.3% of G. All PCGs are initiated by ATN codons, except for the cox1 gene, which was not determined. Nine PCGs use a common stop codon of TAA or TAG, the other four end with an incomplete stop codon (a single stop nucleotide T). Phylogenetic tree analysis showed that U. major had a close relationship with the species from the family Thalassinidae. The study will provide an important theoretical basis for further analysis of mt genome evolution and the phylogenetic relationships of the order Decapoda.http://dx.doi.org/10.1080/23802359.2020.1870898upogebia majormitochondrial genomephylogenetic tree analysis |
| spellingShingle | Xiaoyue Sun Jun He The complete mitochondrial genome and phylogenetic analysis of Upogebia major (De Haan, 1841) Mitochondrial DNA. Part B. Resources upogebia major mitochondrial genome phylogenetic tree analysis |
| title | The complete mitochondrial genome and phylogenetic analysis of Upogebia major (De Haan, 1841) |
| title_full | The complete mitochondrial genome and phylogenetic analysis of Upogebia major (De Haan, 1841) |
| title_fullStr | The complete mitochondrial genome and phylogenetic analysis of Upogebia major (De Haan, 1841) |
| title_full_unstemmed | The complete mitochondrial genome and phylogenetic analysis of Upogebia major (De Haan, 1841) |
| title_short | The complete mitochondrial genome and phylogenetic analysis of Upogebia major (De Haan, 1841) |
| title_sort | complete mitochondrial genome and phylogenetic analysis of upogebia major de haan 1841 |
| topic | upogebia major mitochondrial genome phylogenetic tree analysis |
| url | http://dx.doi.org/10.1080/23802359.2020.1870898 |
| work_keys_str_mv | AT xiaoyuesun thecompletemitochondrialgenomeandphylogeneticanalysisofupogebiamajordehaan1841 AT junhe thecompletemitochondrialgenomeandphylogeneticanalysisofupogebiamajordehaan1841 AT xiaoyuesun completemitochondrialgenomeandphylogeneticanalysisofupogebiamajordehaan1841 AT junhe completemitochondrialgenomeandphylogeneticanalysisofupogebiamajordehaan1841 |