Characterization of the mitochondrial genome of Favonigobius reichei (Perciformes, Gobiidae)
Favonigobius reichei, belongs to the family Gobiidae, which is widely distributed in estuarine and marine waters of the coasts of the Indian and the western Pacific Oceans. The entire mitochondrial genome of F. reichei is 16,415 base pairs (bp) in length and contained 13 protein-coding genes (PCGs),...
| Main Authors: | , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2020-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2020.1791014 |
| _version_ | 1797639172615307264 |
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| author | Xiongbo He Murong Yi Yunrong Yan Yu-Min Ju |
| author_facet | Xiongbo He Murong Yi Yunrong Yan Yu-Min Ju |
| author_sort | Xiongbo He |
| collection | DOAJ |
| description | Favonigobius reichei, belongs to the family Gobiidae, which is widely distributed in estuarine and marine waters of the coasts of the Indian and the western Pacific Oceans. The entire mitochondrial genome of F. reichei is 16,415 base pairs (bp) in length and contained 13 protein-coding genes (PCGs), 2 ribosomal RNA (rRNA) genes, and 22 transfer RNA (tRNA) genes. The overall base composition is 27.71% A, 26.78% T, 28.02% C, and 17.49% G, showing AT-rich feature (54.49%). Phylogenetic analysis based on 13 PCGs shows the F. reichei has the closest evolutionary relationship with Myersina macrostoma. This work provides a valuable mitogenome resource for better understanding of the conservation genetics, environmental DNA, and population studies in the family Gobiidae. |
| first_indexed | 2024-03-11T13:13:00Z |
| format | Article |
| id | doaj.art-c3461d6de02c485dbad575ebb40c62a1 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:13:00Z |
| publishDate | 2020-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-c3461d6de02c485dbad575ebb40c62a12023-11-03T14:00:31ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-07-01532893289410.1080/23802359.2020.17910141791014Characterization of the mitochondrial genome of Favonigobius reichei (Perciformes, Gobiidae)Xiongbo He0Murong Yi1Yunrong Yan2Yu-Min Ju3College of Fisheries, Guangdong Ocean UniversityCollege of Fisheries, Guangdong Ocean UniversityCollege of Fisheries, Guangdong Ocean UniversityNational Museum of Marine Biology and AquariumFavonigobius reichei, belongs to the family Gobiidae, which is widely distributed in estuarine and marine waters of the coasts of the Indian and the western Pacific Oceans. The entire mitochondrial genome of F. reichei is 16,415 base pairs (bp) in length and contained 13 protein-coding genes (PCGs), 2 ribosomal RNA (rRNA) genes, and 22 transfer RNA (tRNA) genes. The overall base composition is 27.71% A, 26.78% T, 28.02% C, and 17.49% G, showing AT-rich feature (54.49%). Phylogenetic analysis based on 13 PCGs shows the F. reichei has the closest evolutionary relationship with Myersina macrostoma. This work provides a valuable mitogenome resource for better understanding of the conservation genetics, environmental DNA, and population studies in the family Gobiidae.http://dx.doi.org/10.1080/23802359.2020.1791014favonigobius reicheimitochondrial genomenext-generation sequencing |
| spellingShingle | Xiongbo He Murong Yi Yunrong Yan Yu-Min Ju Characterization of the mitochondrial genome of Favonigobius reichei (Perciformes, Gobiidae) Mitochondrial DNA. Part B. Resources favonigobius reichei mitochondrial genome next-generation sequencing |
| title | Characterization of the mitochondrial genome of Favonigobius reichei (Perciformes, Gobiidae) |
| title_full | Characterization of the mitochondrial genome of Favonigobius reichei (Perciformes, Gobiidae) |
| title_fullStr | Characterization of the mitochondrial genome of Favonigobius reichei (Perciformes, Gobiidae) |
| title_full_unstemmed | Characterization of the mitochondrial genome of Favonigobius reichei (Perciformes, Gobiidae) |
| title_short | Characterization of the mitochondrial genome of Favonigobius reichei (Perciformes, Gobiidae) |
| title_sort | characterization of the mitochondrial genome of favonigobius reichei perciformes gobiidae |
| topic | favonigobius reichei mitochondrial genome next-generation sequencing |
| url | http://dx.doi.org/10.1080/23802359.2020.1791014 |
| work_keys_str_mv | AT xiongbohe characterizationofthemitochondrialgenomeoffavonigobiusreicheiperciformesgobiidae AT murongyi characterizationofthemitochondrialgenomeoffavonigobiusreicheiperciformesgobiidae AT yunrongyan characterizationofthemitochondrialgenomeoffavonigobiusreicheiperciformesgobiidae AT yuminju characterizationofthemitochondrialgenomeoffavonigobiusreicheiperciformesgobiidae |