Transcriptomic Profiling Analysis of Arabidopsis thaliana Treated with Exogenous Myo-Inositol.
Myo-insositol (MI) is a crucial substance in the growth and developmental processes in plants. It is commonly added to the culture medium to promote adventitious shoot development. In our previous work, MI was found in influencing Agrobacterium-mediated transformation. In this report, a high-through...
| Main Authors: | , , , , |
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| Format: | Article |
| Language: | English |
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Public Library of Science (PLoS)
2016-01-01
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| Series: | PLoS ONE |
| Online Access: | http://europepmc.org/articles/PMC5014391?pdf=render |
| _version_ | 1818360425845096448 |
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| author | Wenxing Ye Weibo Ren Lingqi Kong Wanjun Zhang Tao Wang |
| author_facet | Wenxing Ye Weibo Ren Lingqi Kong Wanjun Zhang Tao Wang |
| author_sort | Wenxing Ye |
| collection | DOAJ |
| description | Myo-insositol (MI) is a crucial substance in the growth and developmental processes in plants. It is commonly added to the culture medium to promote adventitious shoot development. In our previous work, MI was found in influencing Agrobacterium-mediated transformation. In this report, a high-throughput RNA sequencing technique (RNA-Seq) was used to investigate differently expressed genes in one-month-old Arabidopsis seedling grown on MI free or MI supplemented culture medium. The results showed that 21,288 and 21,299 genes were detected with and without MI treatment, respectively. The detected genes included 184 new genes that were not annotated in the Arabidopsis thaliana reference genome. Additionally, 183 differentially expressed genes were identified (DEGs, FDR ≤0.05, log2 FC≥1), including 93 up-regulated genes and 90 down-regulated genes. The DEGs were involved in multiple pathways, such as cell wall biosynthesis, biotic and abiotic stress response, chromosome modification, and substrate transportation. Some significantly differently expressed genes provided us with valuable information for exploring the functions of exogenous MI. RNA-Seq results showed that exogenous MI could alter gene expression and signaling transduction in plant cells. These results provided a systematic understanding of the functions of exogenous MI in detail and provided a foundation for future studies. |
| first_indexed | 2024-12-13T21:00:36Z |
| format | Article |
| id | doaj.art-c35e0c239c6040f09775a3a8a4d49732 |
| institution | Directory Open Access Journal |
| issn | 1932-6203 |
| language | English |
| last_indexed | 2024-12-13T21:00:36Z |
| publishDate | 2016-01-01 |
| publisher | Public Library of Science (PLoS) |
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| spelling | doaj.art-c35e0c239c6040f09775a3a8a4d497322022-12-21T23:31:36ZengPublic Library of Science (PLoS)PLoS ONE1932-62032016-01-01119e016194910.1371/journal.pone.0161949Transcriptomic Profiling Analysis of Arabidopsis thaliana Treated with Exogenous Myo-Inositol.Wenxing YeWeibo RenLingqi KongWanjun ZhangTao WangMyo-insositol (MI) is a crucial substance in the growth and developmental processes in plants. It is commonly added to the culture medium to promote adventitious shoot development. In our previous work, MI was found in influencing Agrobacterium-mediated transformation. In this report, a high-throughput RNA sequencing technique (RNA-Seq) was used to investigate differently expressed genes in one-month-old Arabidopsis seedling grown on MI free or MI supplemented culture medium. The results showed that 21,288 and 21,299 genes were detected with and without MI treatment, respectively. The detected genes included 184 new genes that were not annotated in the Arabidopsis thaliana reference genome. Additionally, 183 differentially expressed genes were identified (DEGs, FDR ≤0.05, log2 FC≥1), including 93 up-regulated genes and 90 down-regulated genes. The DEGs were involved in multiple pathways, such as cell wall biosynthesis, biotic and abiotic stress response, chromosome modification, and substrate transportation. Some significantly differently expressed genes provided us with valuable information for exploring the functions of exogenous MI. RNA-Seq results showed that exogenous MI could alter gene expression and signaling transduction in plant cells. These results provided a systematic understanding of the functions of exogenous MI in detail and provided a foundation for future studies.http://europepmc.org/articles/PMC5014391?pdf=render |
| spellingShingle | Wenxing Ye Weibo Ren Lingqi Kong Wanjun Zhang Tao Wang Transcriptomic Profiling Analysis of Arabidopsis thaliana Treated with Exogenous Myo-Inositol. PLoS ONE |
| title | Transcriptomic Profiling Analysis of Arabidopsis thaliana Treated with Exogenous Myo-Inositol. |
| title_full | Transcriptomic Profiling Analysis of Arabidopsis thaliana Treated with Exogenous Myo-Inositol. |
| title_fullStr | Transcriptomic Profiling Analysis of Arabidopsis thaliana Treated with Exogenous Myo-Inositol. |
| title_full_unstemmed | Transcriptomic Profiling Analysis of Arabidopsis thaliana Treated with Exogenous Myo-Inositol. |
| title_short | Transcriptomic Profiling Analysis of Arabidopsis thaliana Treated with Exogenous Myo-Inositol. |
| title_sort | transcriptomic profiling analysis of arabidopsis thaliana treated with exogenous myo inositol |
| url | http://europepmc.org/articles/PMC5014391?pdf=render |
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