Complete chloroplast genome sequence of Hopea chinensis (Dipterocarpaceae), a rare and critically endangered species
Hopea chinensis (Dipterocarpaceae) is a rare and critically endangered species. Here, we first report and characterize its complete chloroplast genome sequence based on Illumina paired-end sequencing data. The complete plastid genome was 152,054 bp, which contained inverted repeats (IR) of 21,702 bp...
| Main Authors: | , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2019-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1681920 |
| _version_ | 1797639595342430208 |
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| author | Yancai Shi Na Duan Bingbing Liu |
| author_facet | Yancai Shi Na Duan Bingbing Liu |
| author_sort | Yancai Shi |
| collection | DOAJ |
| description | Hopea chinensis (Dipterocarpaceae) is a rare and critically endangered species. Here, we first report and characterize its complete chloroplast genome sequence based on Illumina paired-end sequencing data. The complete plastid genome was 152,054 bp, which contained inverted repeats (IR) of 21,702 bp separated by a large single-copy (LSC) and a small single-copy (SSC) of 20,462 bp and 88,188 bp, respectively. The cpDNA contains 129 genes, comprising 83 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. The overall GC content of the plastome is 37.4%. The phylogenetic analysis of 18 selected chloroplast genomes demonstrated that H. chinensis was close to the species Parashorea macrophylla. |
| first_indexed | 2024-03-11T13:19:53Z |
| format | Article |
| id | doaj.art-c3c17c125ffd424992b984e9c65135fe |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:19:53Z |
| publishDate | 2019-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-c3c17c125ffd424992b984e9c65135fe2023-11-03T10:38:50ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-07-01424079408010.1080/23802359.2019.16819201681920Complete chloroplast genome sequence of Hopea chinensis (Dipterocarpaceae), a rare and critically endangered speciesYancai Shi0Na Duan1Bingbing Liu2Institute of Loess Plateau, Shanxi UniversityInstitute of Loess Plateau, Shanxi UniversityInstitute of Loess Plateau, Shanxi UniversityHopea chinensis (Dipterocarpaceae) is a rare and critically endangered species. Here, we first report and characterize its complete chloroplast genome sequence based on Illumina paired-end sequencing data. The complete plastid genome was 152,054 bp, which contained inverted repeats (IR) of 21,702 bp separated by a large single-copy (LSC) and a small single-copy (SSC) of 20,462 bp and 88,188 bp, respectively. The cpDNA contains 129 genes, comprising 83 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. The overall GC content of the plastome is 37.4%. The phylogenetic analysis of 18 selected chloroplast genomes demonstrated that H. chinensis was close to the species Parashorea macrophylla.http://dx.doi.org/10.1080/23802359.2019.1681920hopeachloroplast genomephylogenetic analysis |
| spellingShingle | Yancai Shi Na Duan Bingbing Liu Complete chloroplast genome sequence of Hopea chinensis (Dipterocarpaceae), a rare and critically endangered species Mitochondrial DNA. Part B. Resources hopea chloroplast genome phylogenetic analysis |
| title | Complete chloroplast genome sequence of Hopea chinensis (Dipterocarpaceae), a rare and critically endangered species |
| title_full | Complete chloroplast genome sequence of Hopea chinensis (Dipterocarpaceae), a rare and critically endangered species |
| title_fullStr | Complete chloroplast genome sequence of Hopea chinensis (Dipterocarpaceae), a rare and critically endangered species |
| title_full_unstemmed | Complete chloroplast genome sequence of Hopea chinensis (Dipterocarpaceae), a rare and critically endangered species |
| title_short | Complete chloroplast genome sequence of Hopea chinensis (Dipterocarpaceae), a rare and critically endangered species |
| title_sort | complete chloroplast genome sequence of hopea chinensis dipterocarpaceae a rare and critically endangered species |
| topic | hopea chloroplast genome phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2019.1681920 |
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