Draft genome sequencing data of a pathogenic Pantoea stewartii subspecies stewartii strain SQT1 causing bronzing disease of jackfruit in Malaysia
A Gram-negative bacterium, Pantoea stewartii subspecies stewartii (P. stewartii subsp. stewartii) has been recognized as the causative agent for jackfruit bronzing disease in Malaysia. Here, we report the whole genome sequencing dataset of P. stewartii subsp. stewartii strain SQT1 isolated from loca...
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| Format: | Article |
| Language: | English |
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Elsevier
2020-06-01
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| Series: | Data in Brief |
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| Online Access: | http://www.sciencedirect.com/science/article/pii/S235234092030528X |
| _version_ | 1811222944612876288 |
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| author | Rohaya Ibrahim Noor Wahida Ismail-Suhaimy Tan Shu-Qing Siti Izera Ismail Md Yasin Ina-Salwany Mohd Termizi Yusof Mansor Hakiman Daljit Singh Karam Dzarifah Zulperi |
| author_facet | Rohaya Ibrahim Noor Wahida Ismail-Suhaimy Tan Shu-Qing Siti Izera Ismail Md Yasin Ina-Salwany Mohd Termizi Yusof Mansor Hakiman Daljit Singh Karam Dzarifah Zulperi |
| author_sort | Rohaya Ibrahim |
| collection | DOAJ |
| description | A Gram-negative bacterium, Pantoea stewartii subspecies stewartii (P. stewartii subsp. stewartii) has been recognized as the causative agent for jackfruit bronzing disease in Malaysia. Here, we report the whole genome sequencing dataset of P. stewartii subsp. stewartii strain SQT1 isolated from local infected jackfruit. The paired-end libraries with an insert size of 350 bp was subjected to the Illumina Hiseq 4000, generating a genome size of 4,783,993 bp with a G+C content of 53.7%. A total protein of 4,671 was identified including virulence factors, resistance factors and secretion systems. Pantoea stewartii subsp. stewartii strain DC283 (NCBI accession no. CP017581.1) was used as a reference genome, where the query hit 72% coverage and average sequencing depth of 68. In total, 28,717 nucleotide polymorphisms, 520 small insertion/deletions and 142 structure variants were identified. The complete genome was deposited at the European Nucleotide Archive under the sample accession number ERP119356 and study accession number PRJEB36196. |
| first_indexed | 2024-04-12T08:23:27Z |
| format | Article |
| id | doaj.art-c3ef64b5ea614298a948d462deb5a53d |
| institution | Directory Open Access Journal |
| issn | 2352-3409 |
| language | English |
| last_indexed | 2024-04-12T08:23:27Z |
| publishDate | 2020-06-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Data in Brief |
| spelling | doaj.art-c3ef64b5ea614298a948d462deb5a53d2022-12-22T03:40:28ZengElsevierData in Brief2352-34092020-06-0130105634Draft genome sequencing data of a pathogenic Pantoea stewartii subspecies stewartii strain SQT1 causing bronzing disease of jackfruit in MalaysiaRohaya Ibrahim0Noor Wahida Ismail-Suhaimy1Tan Shu-Qing2Siti Izera Ismail3Md Yasin Ina-Salwany4Mohd Termizi Yusof5Mansor Hakiman6Daljit Singh Karam7Dzarifah Zulperi8Department of Plant Protection, Faculty of Agriculture, Universiti Putra Malaysia, 43400 Serdang, Selangor, MalaysiaDepartment of Plant Protection, Faculty of Agriculture, Universiti Putra Malaysia, 43400 Serdang, Selangor, MalaysiaDepartment of Plant Protection, Faculty of Agriculture, Universiti Putra Malaysia, 43400 Serdang, Selangor, MalaysiaDepartment of Plant Protection, Faculty of Agriculture, Universiti Putra Malaysia, 43400 Serdang, Selangor, MalaysiaDepartment of Aquaculture, Faculty of Agriculture, Universiti Putra Malaysia, 43400 Serdang, Selangor, MalaysiaDepartment of Microbiology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400 Serdang, Selangor, MalaysiaDepartment of Crop Science, Faculty of Agriculture, Universiti Putra Malaysia, 43400 Serdang, Selangor, MalaysiaDepartment of Land Management, Faculty of Agriculture, Universiti Putra Malaysia, 43400 Serdang, Selangor, MalaysiaDepartment of Plant Protection, Faculty of Agriculture, Universiti Putra Malaysia, 43400 Serdang, Selangor, Malaysia; Laboratory of Sustainable Resources Management, Institute of Tropical Forestry and Forest Products, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia; Corresponding author. Dzarifah Zulperi. .A Gram-negative bacterium, Pantoea stewartii subspecies stewartii (P. stewartii subsp. stewartii) has been recognized as the causative agent for jackfruit bronzing disease in Malaysia. Here, we report the whole genome sequencing dataset of P. stewartii subsp. stewartii strain SQT1 isolated from local infected jackfruit. The paired-end libraries with an insert size of 350 bp was subjected to the Illumina Hiseq 4000, generating a genome size of 4,783,993 bp with a G+C content of 53.7%. A total protein of 4,671 was identified including virulence factors, resistance factors and secretion systems. Pantoea stewartii subsp. stewartii strain DC283 (NCBI accession no. CP017581.1) was used as a reference genome, where the query hit 72% coverage and average sequencing depth of 68. In total, 28,717 nucleotide polymorphisms, 520 small insertion/deletions and 142 structure variants were identified. The complete genome was deposited at the European Nucleotide Archive under the sample accession number ERP119356 and study accession number PRJEB36196.http://www.sciencedirect.com/science/article/pii/S235234092030528XMalaysiabronzing diseasejackfruitPantoea stewartii subspecies stewartiigenome sequencingIllumina Hiseq |
| spellingShingle | Rohaya Ibrahim Noor Wahida Ismail-Suhaimy Tan Shu-Qing Siti Izera Ismail Md Yasin Ina-Salwany Mohd Termizi Yusof Mansor Hakiman Daljit Singh Karam Dzarifah Zulperi Draft genome sequencing data of a pathogenic Pantoea stewartii subspecies stewartii strain SQT1 causing bronzing disease of jackfruit in Malaysia Data in Brief Malaysia bronzing disease jackfruit Pantoea stewartii subspecies stewartii genome sequencing Illumina Hiseq |
| title | Draft genome sequencing data of a pathogenic Pantoea stewartii subspecies stewartii strain SQT1 causing bronzing disease of jackfruit in Malaysia |
| title_full | Draft genome sequencing data of a pathogenic Pantoea stewartii subspecies stewartii strain SQT1 causing bronzing disease of jackfruit in Malaysia |
| title_fullStr | Draft genome sequencing data of a pathogenic Pantoea stewartii subspecies stewartii strain SQT1 causing bronzing disease of jackfruit in Malaysia |
| title_full_unstemmed | Draft genome sequencing data of a pathogenic Pantoea stewartii subspecies stewartii strain SQT1 causing bronzing disease of jackfruit in Malaysia |
| title_short | Draft genome sequencing data of a pathogenic Pantoea stewartii subspecies stewartii strain SQT1 causing bronzing disease of jackfruit in Malaysia |
| title_sort | draft genome sequencing data of a pathogenic pantoea stewartii subspecies stewartii strain sqt1 causing bronzing disease of jackfruit in malaysia |
| topic | Malaysia bronzing disease jackfruit Pantoea stewartii subspecies stewartii genome sequencing Illumina Hiseq |
| url | http://www.sciencedirect.com/science/article/pii/S235234092030528X |
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