Complete chloroplast genome features and phylogenetic analysis of Abies ernestii var. salouenensis (Bordères and Gaussen) W. C. Cheng and L. K. Fu from southwest China
Abies ernestii var. salouenensis (Bordères & Gaussen) W. C. Cheng & L. K. Fu is endemic to southwest China, including the southeastern Tibetan Plateau and the northwestern Yunnan Province. The taxonomic relationships between A. ernestii var. salouenensis and two other closely related fir spe...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2023-05-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2023.2209384 |
| _version_ | 1797638529167130624 |
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| author | Yi-Zhen Shao Zhao Wang Wen-Jun Liu Peng-Fei Zhao Si Wu |
| author_facet | Yi-Zhen Shao Zhao Wang Wen-Jun Liu Peng-Fei Zhao Si Wu |
| author_sort | Yi-Zhen Shao |
| collection | DOAJ |
| description | Abies ernestii var. salouenensis (Bordères & Gaussen) W. C. Cheng & L. K. Fu is endemic to southwest China, including the southeastern Tibetan Plateau and the northwestern Yunnan Province. The taxonomic relationships between A. ernestii var. salouenensis and two other closely related fir species (A. chensiensis Tiegh. and A. ernestii Rehd.) still need to be determined. Here, we report for the first time the whole chloroplast genome of A. ernestii var. salouenensis. Its genome is 121,759 bp long and is characterized by a circular structure with 68 peptide-encoding genes, 16 tRNAs, six ORFs, and four rRNAs. We also identified 70 microsatellite repeat sequences and 14 tandem repeat sequences in the chloroplast genome of A. ernestii var. salouenensis. Comparative genome analysis indicated considerable variation in ycf1 and ycf2. Phylogenetic analysis supported the monophyly of A. ernestii var. salouenensis, A. chensiensis Tiegh., and A. ernestii Rehd. The relationships among them should be surveyed using more samples at the species level. This study will facilitate taxonomic studies and the development of suitable chloroplast markers for fir species. |
| first_indexed | 2024-03-11T13:03:47Z |
| format | Article |
| id | doaj.art-c59597e3512748f69c03ec406f4bed18 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:03:47Z |
| publishDate | 2023-05-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-c59597e3512748f69c03ec406f4bed182023-11-03T14:44:07ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592023-05-018555055610.1080/23802359.2023.22093842209384Complete chloroplast genome features and phylogenetic analysis of Abies ernestii var. salouenensis (Bordères and Gaussen) W. C. Cheng and L. K. Fu from southwest ChinaYi-Zhen Shao0Zhao Wang1Wen-Jun Liu2Peng-Fei Zhao3Si Wu4College of Life Sciences, Henan Agriculture UniversityCollege of Life Sciences, Henan Agriculture UniversityCollege of Life Sciences, Henan Agriculture UniversityCollege of Life Sciences, Henan Agriculture UniversitySchool of Life Sciences, Zhengzhou Normal UniversityAbies ernestii var. salouenensis (Bordères & Gaussen) W. C. Cheng & L. K. Fu is endemic to southwest China, including the southeastern Tibetan Plateau and the northwestern Yunnan Province. The taxonomic relationships between A. ernestii var. salouenensis and two other closely related fir species (A. chensiensis Tiegh. and A. ernestii Rehd.) still need to be determined. Here, we report for the first time the whole chloroplast genome of A. ernestii var. salouenensis. Its genome is 121,759 bp long and is characterized by a circular structure with 68 peptide-encoding genes, 16 tRNAs, six ORFs, and four rRNAs. We also identified 70 microsatellite repeat sequences and 14 tandem repeat sequences in the chloroplast genome of A. ernestii var. salouenensis. Comparative genome analysis indicated considerable variation in ycf1 and ycf2. Phylogenetic analysis supported the monophyly of A. ernestii var. salouenensis, A. chensiensis Tiegh., and A. ernestii Rehd. The relationships among them should be surveyed using more samples at the species level. This study will facilitate taxonomic studies and the development of suitable chloroplast markers for fir species.http://dx.doi.org/10.1080/23802359.2023.2209384abies ernestii var. salouenensiscomparative genome analysescomplete chloroplast genomephylogenetic analysis |
| spellingShingle | Yi-Zhen Shao Zhao Wang Wen-Jun Liu Peng-Fei Zhao Si Wu Complete chloroplast genome features and phylogenetic analysis of Abies ernestii var. salouenensis (Bordères and Gaussen) W. C. Cheng and L. K. Fu from southwest China Mitochondrial DNA. Part B. Resources abies ernestii var. salouenensis comparative genome analyses complete chloroplast genome phylogenetic analysis |
| title | Complete chloroplast genome features and phylogenetic analysis of Abies ernestii var. salouenensis (Bordères and Gaussen) W. C. Cheng and L. K. Fu from southwest China |
| title_full | Complete chloroplast genome features and phylogenetic analysis of Abies ernestii var. salouenensis (Bordères and Gaussen) W. C. Cheng and L. K. Fu from southwest China |
| title_fullStr | Complete chloroplast genome features and phylogenetic analysis of Abies ernestii var. salouenensis (Bordères and Gaussen) W. C. Cheng and L. K. Fu from southwest China |
| title_full_unstemmed | Complete chloroplast genome features and phylogenetic analysis of Abies ernestii var. salouenensis (Bordères and Gaussen) W. C. Cheng and L. K. Fu from southwest China |
| title_short | Complete chloroplast genome features and phylogenetic analysis of Abies ernestii var. salouenensis (Bordères and Gaussen) W. C. Cheng and L. K. Fu from southwest China |
| title_sort | complete chloroplast genome features and phylogenetic analysis of abies ernestii var salouenensis borderes and gaussen w c cheng and l k fu from southwest china |
| topic | abies ernestii var. salouenensis comparative genome analyses complete chloroplast genome phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2023.2209384 |
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