The complete chloroplast genome of Chloranthus nervosus Collett ex Hemsl. 1890 (Chloranthaceae)
AbstractIn this study, we sequenced and assembled the complete chloroplast genome of Chloranthus nervosus Collett ex Hemsl. 1890. The total length of the complete chloroplast sequence was found to be 158,002 bp. It consisted of a large single-copy (LSC) region of 87,127 bp, a small single-copy (SSC)...
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Taylor & Francis Group
2023-11-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | https://www.tandfonline.com/doi/10.1080/23802359.2023.2278818 |
| _version_ | 1797244443395358720 |
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| author | Shu-Ting Yao Yong-Bin Lu Zhan-Jiang Zhang Cui Li Peng-Fei Wang Xin-Mei Qin |
| author_facet | Shu-Ting Yao Yong-Bin Lu Zhan-Jiang Zhang Cui Li Peng-Fei Wang Xin-Mei Qin |
| author_sort | Shu-Ting Yao |
| collection | DOAJ |
| description | AbstractIn this study, we sequenced and assembled the complete chloroplast genome of Chloranthus nervosus Collett ex Hemsl. 1890. The total length of the complete chloroplast sequence was found to be 158,002 bp. It consisted of a large single-copy (LSC) region of 87,127 bp, a small single-copy (SSC) region of 18,541 bp, and a pair of inverted repeat (IR) regions, each with a length of 26,167 bp. The overall GC content of the complete chloroplast genome was 38.9%, with the LSC region, SSC region, and IR regions exhibiting GC contents of 37.4%, 34.1%, and 43.1%, respectively. The annotation of the chloroplast genome revealed a total of 131 genes, comprising 86 protein-coding genes, 37 tRNA genes, and eight rRNA genes. Phylogenetic analysis revealed that the seven sampled species of Chloranthus were divided into two clades. Within the clade characterized by long filamentous anther connectives, C. nervosus showed the closest relation to C. japonicus. These findings validated the previous preliminary results on the phylogenetic relationships of the seven species of Chloranthus with strong support. |
| first_indexed | 2024-03-08T15:56:55Z |
| format | Article |
| id | doaj.art-c61985d3b24e46f9823aa3a65f342446 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-04-24T19:11:05Z |
| publishDate | 2023-11-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-c61985d3b24e46f9823aa3a65f3424462024-03-26T11:04:23ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592023-11-018111224122810.1080/23802359.2023.2278818The complete chloroplast genome of Chloranthus nervosus Collett ex Hemsl. 1890 (Chloranthaceae)Shu-Ting Yao0Yong-Bin Lu1Zhan-Jiang Zhang2Cui Li3Peng-Fei Wang4Xin-Mei Qin5College of Life Sciences, Guangxi Normal University, Guilin, ChinaGuangxi Key Laboratory of Plant Conservation and Restoration Ecology in Karst Terrain, Guangxi Institute of Botany, Guangxi Zhuang Autonomous Region and Chinese Academy of Sciences, Guilin, ChinaGuangxi Key Laboratory of Medicinal Resources Protection and Genetic Improvement, Guangxi Botanical Garden of Medicinal Plant, Nanning, ChinaGuangxi Key Laboratory of Medicinal Resources Protection and Genetic Improvement, Guangxi Botanical Garden of Medicinal Plant, Nanning, ChinaTechnology Center, China Tobacco Henan Industrial Co., Ltd., Zhengzhou, ChinaGuangxi Key Laboratory of Plant Conservation and Restoration Ecology in Karst Terrain, Guangxi Institute of Botany, Guangxi Zhuang Autonomous Region and Chinese Academy of Sciences, Guilin, ChinaAbstractIn this study, we sequenced and assembled the complete chloroplast genome of Chloranthus nervosus Collett ex Hemsl. 1890. The total length of the complete chloroplast sequence was found to be 158,002 bp. It consisted of a large single-copy (LSC) region of 87,127 bp, a small single-copy (SSC) region of 18,541 bp, and a pair of inverted repeat (IR) regions, each with a length of 26,167 bp. The overall GC content of the complete chloroplast genome was 38.9%, with the LSC region, SSC region, and IR regions exhibiting GC contents of 37.4%, 34.1%, and 43.1%, respectively. The annotation of the chloroplast genome revealed a total of 131 genes, comprising 86 protein-coding genes, 37 tRNA genes, and eight rRNA genes. Phylogenetic analysis revealed that the seven sampled species of Chloranthus were divided into two clades. Within the clade characterized by long filamentous anther connectives, C. nervosus showed the closest relation to C. japonicus. These findings validated the previous preliminary results on the phylogenetic relationships of the seven species of Chloranthus with strong support.https://www.tandfonline.com/doi/10.1080/23802359.2023.2278818Chloranthus nervosuschloroplast genomephylogenetic analysis |
| spellingShingle | Shu-Ting Yao Yong-Bin Lu Zhan-Jiang Zhang Cui Li Peng-Fei Wang Xin-Mei Qin The complete chloroplast genome of Chloranthus nervosus Collett ex Hemsl. 1890 (Chloranthaceae) Mitochondrial DNA. Part B. Resources Chloranthus nervosus chloroplast genome phylogenetic analysis |
| title | The complete chloroplast genome of Chloranthus nervosus Collett ex Hemsl. 1890 (Chloranthaceae) |
| title_full | The complete chloroplast genome of Chloranthus nervosus Collett ex Hemsl. 1890 (Chloranthaceae) |
| title_fullStr | The complete chloroplast genome of Chloranthus nervosus Collett ex Hemsl. 1890 (Chloranthaceae) |
| title_full_unstemmed | The complete chloroplast genome of Chloranthus nervosus Collett ex Hemsl. 1890 (Chloranthaceae) |
| title_short | The complete chloroplast genome of Chloranthus nervosus Collett ex Hemsl. 1890 (Chloranthaceae) |
| title_sort | complete chloroplast genome of chloranthus nervosus collett ex hemsl 1890 chloranthaceae |
| topic | Chloranthus nervosus chloroplast genome phylogenetic analysis |
| url | https://www.tandfonline.com/doi/10.1080/23802359.2023.2278818 |
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