The complete chloroplast genome of Echinochloa haploclada
The genus Echinochloa (Poaceae) includes orphan crops and important agricultural weeds. Here, we assembled the complete chloroplast genome of a diploid Echinochloa species (E. haploclada). The chloroplast genome is 139,844 bp in length, which includes a large single copy region (81,893 bp), a small...
| Main Authors: | , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2021-11-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2021.1982654 |
| _version_ | 1797638739596410880 |
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| author | Bowen Jiang Sangting Lao Dongya Wu Longjiang Fan Chu-Yu Ye |
| author_facet | Bowen Jiang Sangting Lao Dongya Wu Longjiang Fan Chu-Yu Ye |
| author_sort | Bowen Jiang |
| collection | DOAJ |
| description | The genus Echinochloa (Poaceae) includes orphan crops and important agricultural weeds. Here, we assembled the complete chloroplast genome of a diploid Echinochloa species (E. haploclada). The chloroplast genome is 139,844 bp in length, which includes a large single copy region (81,893 bp), a small single copy region (12,533 bp) and two separated inverted repeat regions (45,418 bp). A total of 119 unique genes were annotated, consisting of 83 protein-coding genes, 32 tRNA genes and 4 rRNA genes. Hexaploid E. crus-galli, one of the most serious weeds worldwide, was derived from a hybrid between tetraploid E. oryzicola and an unknown diploid species. Based on chloroplast genomes of eight Echinochloa species (varieties), the phylogenetic analysis showed that E. crus-galli clustered firstly with diploid E. haploclada rather than tetraploid E. oryzicola, supporting previous assumption that E. oryzicola is the paternal donor of E. crus-galli. |
| first_indexed | 2024-03-11T13:07:52Z |
| format | Article |
| id | doaj.art-c737eeedbad34c35bc74d4f4b9c7e3c2 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:07:52Z |
| publishDate | 2021-11-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-c737eeedbad34c35bc74d4f4b9c7e3c22023-11-03T14:28:31ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592021-11-016113105310610.1080/23802359.2021.19826541982654The complete chloroplast genome of Echinochloa haplocladaBowen Jiang0Sangting Lao1Dongya Wu2Longjiang Fan3Chu-Yu Ye4Institute of Crop Sciences, College of Agriculture and Biotechnology, Zhejiang UniversityInstitute of Crop Sciences, College of Agriculture and Biotechnology, Zhejiang UniversityInstitute of Crop Sciences, College of Agriculture and Biotechnology, Zhejiang UniversityInstitute of Crop Sciences, College of Agriculture and Biotechnology, Zhejiang UniversityInstitute of Crop Sciences, College of Agriculture and Biotechnology, Zhejiang UniversityThe genus Echinochloa (Poaceae) includes orphan crops and important agricultural weeds. Here, we assembled the complete chloroplast genome of a diploid Echinochloa species (E. haploclada). The chloroplast genome is 139,844 bp in length, which includes a large single copy region (81,893 bp), a small single copy region (12,533 bp) and two separated inverted repeat regions (45,418 bp). A total of 119 unique genes were annotated, consisting of 83 protein-coding genes, 32 tRNA genes and 4 rRNA genes. Hexaploid E. crus-galli, one of the most serious weeds worldwide, was derived from a hybrid between tetraploid E. oryzicola and an unknown diploid species. Based on chloroplast genomes of eight Echinochloa species (varieties), the phylogenetic analysis showed that E. crus-galli clustered firstly with diploid E. haploclada rather than tetraploid E. oryzicola, supporting previous assumption that E. oryzicola is the paternal donor of E. crus-galli.http://dx.doi.org/10.1080/23802359.2021.1982654chloroplast genomeechinochloa haplocladaechinochloa crus-galliweed |
| spellingShingle | Bowen Jiang Sangting Lao Dongya Wu Longjiang Fan Chu-Yu Ye The complete chloroplast genome of Echinochloa haploclada Mitochondrial DNA. Part B. Resources chloroplast genome echinochloa haploclada echinochloa crus-galli weed |
| title | The complete chloroplast genome of Echinochloa haploclada |
| title_full | The complete chloroplast genome of Echinochloa haploclada |
| title_fullStr | The complete chloroplast genome of Echinochloa haploclada |
| title_full_unstemmed | The complete chloroplast genome of Echinochloa haploclada |
| title_short | The complete chloroplast genome of Echinochloa haploclada |
| title_sort | complete chloroplast genome of echinochloa haploclada |
| topic | chloroplast genome echinochloa haploclada echinochloa crus-galli weed |
| url | http://dx.doi.org/10.1080/23802359.2021.1982654 |
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