Maternal genomic variability of the wild boar (Sus scrofa) reveals the uniqueness of East‐Caucasian and Central Italian populations
Abstract The phylogeography of the European wild boar was mainly determined by postglacial recolonization patterns from Mediterranean refugia after the last ice age. Here we present the first analysis of SNP polymorphism within the complete mtDNA genome of West Russian (n = 8), European (n = 64), an...
| Main Authors: | , , , , , , , , , , , |
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| Format: | Article |
| Language: | English |
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Wiley
2019-09-01
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| Series: | Ecology and Evolution |
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| Online Access: | https://doi.org/10.1002/ece3.5415 |
| _version_ | 1818670898896437248 |
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| author | Saber Khederzadeh Szilvia Kusza Cui‐Ping Huang Nickolay Markov Massimo Scandura Elmar Babaev Nikica Šprem Ivan V. Seryodkin Ladislav Paule Ali Esmailizadeh Hai‐Bing Xie Ya‐Ping Zhang |
| author_facet | Saber Khederzadeh Szilvia Kusza Cui‐Ping Huang Nickolay Markov Massimo Scandura Elmar Babaev Nikica Šprem Ivan V. Seryodkin Ladislav Paule Ali Esmailizadeh Hai‐Bing Xie Ya‐Ping Zhang |
| author_sort | Saber Khederzadeh |
| collection | DOAJ |
| description | Abstract The phylogeography of the European wild boar was mainly determined by postglacial recolonization patterns from Mediterranean refugia after the last ice age. Here we present the first analysis of SNP polymorphism within the complete mtDNA genome of West Russian (n = 8), European (n = 64), and North African (n = 5) wild boar. Our analyses provided evidence of unique lineages in the East‐Caucasian (Dagestan) region and in Central Italy. A phylogenetic analysis revealed that these lineages are basal to the other European mtDNA sequences. We also show close connection between the Western Siberian and Eastern European populations. Also, the North African samples were clustered with the Iberian population. Phylogenetic trees and migration modeling revealed a high proximity of Dagestan sequences to those of Central Italy and suggested possible gene flow between Western Asia and Southern Europe which was not directly related to Northern and Central European lineages. Our results support the presence of old maternal lineages in two Southern glacial refugia (i.e., Caucasus and the Italian peninsula), as a legacy of an ancient wave of colonization of Southern Europe from an Eastern origin. |
| first_indexed | 2024-12-17T07:15:26Z |
| format | Article |
| id | doaj.art-c7c6ee610602436681f536d2a2c4b9a6 |
| institution | Directory Open Access Journal |
| issn | 2045-7758 |
| language | English |
| last_indexed | 2024-12-17T07:15:26Z |
| publishDate | 2019-09-01 |
| publisher | Wiley |
| record_format | Article |
| series | Ecology and Evolution |
| spelling | doaj.art-c7c6ee610602436681f536d2a2c4b9a62022-12-21T21:58:54ZengWileyEcology and Evolution2045-77582019-09-019179467947810.1002/ece3.5415Maternal genomic variability of the wild boar (Sus scrofa) reveals the uniqueness of East‐Caucasian and Central Italian populationsSaber Khederzadeh0Szilvia Kusza1Cui‐Ping Huang2Nickolay Markov3Massimo Scandura4Elmar Babaev5Nikica Šprem6Ivan V. Seryodkin7Ladislav Paule8Ali Esmailizadeh9Hai‐Bing Xie10Ya‐Ping Zhang11State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology Chinese Academy of Sciences Kunming ChinaAnimal Genetics Laboratory, Faculty of Agricultural and Food Sciences and Environmental Management University of Debrecen Debrecen HungaryState Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology Chinese Academy of Sciences Kunming ChinaDepartment of Game Animals' Ecology, Institute of Plant and Animal Ecology Ural Branch of Russian Academy of Sciences Yekaterinburg RussiaDepartment of Veterinary Medicine University of Sassari Sassari ItalyCaspian Institute of Biological Resources Makhachkala RussiaDepartment of Fisheries, Beekeeping, Game Management and Special Zoology, Faculty of Agriculture University of Zagreb Zagreb CroatiaPacific Geographical Institute FEB RAS Vladivostok RussiaFaculty of Forestry Technical University in Zvolen Zvolen SlovakiaDepartment of Animal Science, Faculty of Agriculture Shahid Bahonar University of Kerman Kerman IranState Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology Chinese Academy of Sciences Kunming ChinaState Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology Chinese Academy of Sciences Kunming ChinaAbstract The phylogeography of the European wild boar was mainly determined by postglacial recolonization patterns from Mediterranean refugia after the last ice age. Here we present the first analysis of SNP polymorphism within the complete mtDNA genome of West Russian (n = 8), European (n = 64), and North African (n = 5) wild boar. Our analyses provided evidence of unique lineages in the East‐Caucasian (Dagestan) region and in Central Italy. A phylogenetic analysis revealed that these lineages are basal to the other European mtDNA sequences. We also show close connection between the Western Siberian and Eastern European populations. Also, the North African samples were clustered with the Iberian population. Phylogenetic trees and migration modeling revealed a high proximity of Dagestan sequences to those of Central Italy and suggested possible gene flow between Western Asia and Southern Europe which was not directly related to Northern and Central European lineages. Our results support the presence of old maternal lineages in two Southern glacial refugia (i.e., Caucasus and the Italian peninsula), as a legacy of an ancient wave of colonization of Southern Europe from an Eastern origin.https://doi.org/10.1002/ece3.5415Caucasusmigration modelingphylogenySus scrofawhole mtDNA |
| spellingShingle | Saber Khederzadeh Szilvia Kusza Cui‐Ping Huang Nickolay Markov Massimo Scandura Elmar Babaev Nikica Šprem Ivan V. Seryodkin Ladislav Paule Ali Esmailizadeh Hai‐Bing Xie Ya‐Ping Zhang Maternal genomic variability of the wild boar (Sus scrofa) reveals the uniqueness of East‐Caucasian and Central Italian populations Ecology and Evolution Caucasus migration modeling phylogeny Sus scrofa whole mtDNA |
| title | Maternal genomic variability of the wild boar (Sus scrofa) reveals the uniqueness of East‐Caucasian and Central Italian populations |
| title_full | Maternal genomic variability of the wild boar (Sus scrofa) reveals the uniqueness of East‐Caucasian and Central Italian populations |
| title_fullStr | Maternal genomic variability of the wild boar (Sus scrofa) reveals the uniqueness of East‐Caucasian and Central Italian populations |
| title_full_unstemmed | Maternal genomic variability of the wild boar (Sus scrofa) reveals the uniqueness of East‐Caucasian and Central Italian populations |
| title_short | Maternal genomic variability of the wild boar (Sus scrofa) reveals the uniqueness of East‐Caucasian and Central Italian populations |
| title_sort | maternal genomic variability of the wild boar sus scrofa reveals the uniqueness of east caucasian and central italian populations |
| topic | Caucasus migration modeling phylogeny Sus scrofa whole mtDNA |
| url | https://doi.org/10.1002/ece3.5415 |
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