The complete chloroplast genome sequence of the threatened Cypripedium calceolus (Orchidaceae)
The complete chloroplast genome of Cypripedium calceolus, a rare species in the family Orchidaceae was reported in this study. The genome size is 175,122 bp in length, and contains four sub-regions: 97,486 bp of large single copy (LSC) and 22,260 bp of small copy (SSC) regions, separated by 27,688 b...
| Main Authors: | , , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2019-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1693933 |
| _version_ | 1827773154595962880 |
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| author | Li-Jie Zhang Rui Ding Wei-Wei Meng Hua-Lei Hu Xu-Hui Chen Hai-Hong Wu |
| author_facet | Li-Jie Zhang Rui Ding Wei-Wei Meng Hua-Lei Hu Xu-Hui Chen Hai-Hong Wu |
| author_sort | Li-Jie Zhang |
| collection | DOAJ |
| description | The complete chloroplast genome of Cypripedium calceolus, a rare species in the family Orchidaceae was reported in this study. The genome size is 175,122 bp in length, and contains four sub-regions: 97,486 bp of large single copy (LSC) and 22,260 bp of small copy (SSC) regions, separated by 27,688 bp of inverted repeat (IR) regions. A total of 133 genes were annotated, including 87 protein-coding genes, 38 tRNA genes and 8 rRNA genes. The GC content of this cp genome is 34.36%. Phylogenetic analysis revealed a close relationship between C. calceolus with C. japonicum and C. formosanum. This is the first complete cp genome for C. calceolus that would be useful for conservation and phylogenetic studies of this species. |
| first_indexed | 2024-03-11T13:18:57Z |
| format | Article |
| id | doaj.art-c82135cbb391468db383dd0ee27ec046 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:18:57Z |
| publishDate | 2019-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-c82135cbb391468db383dd0ee27ec0462023-11-03T10:38:53ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-07-01424220422210.1080/23802359.2019.16939331693933The complete chloroplast genome sequence of the threatened Cypripedium calceolus (Orchidaceae)Li-Jie Zhang0Rui Ding1Wei-Wei Meng2Hua-Lei Hu3Xu-Hui Chen4Hai-Hong Wu5Shenyang Agricultural UniversityShenyang Agricultural UniversityShenyang Agricultural UniversityShenyang Agricultural UniversityShenyang Agricultural UniversityLiaoning Academy of Agricultural SciencesThe complete chloroplast genome of Cypripedium calceolus, a rare species in the family Orchidaceae was reported in this study. The genome size is 175,122 bp in length, and contains four sub-regions: 97,486 bp of large single copy (LSC) and 22,260 bp of small copy (SSC) regions, separated by 27,688 bp of inverted repeat (IR) regions. A total of 133 genes were annotated, including 87 protein-coding genes, 38 tRNA genes and 8 rRNA genes. The GC content of this cp genome is 34.36%. Phylogenetic analysis revealed a close relationship between C. calceolus with C. japonicum and C. formosanum. This is the first complete cp genome for C. calceolus that would be useful for conservation and phylogenetic studies of this species.http://dx.doi.org/10.1080/23802359.2019.1693933chloroplast genomecypripedium calceolusrare orchidconservation |
| spellingShingle | Li-Jie Zhang Rui Ding Wei-Wei Meng Hua-Lei Hu Xu-Hui Chen Hai-Hong Wu The complete chloroplast genome sequence of the threatened Cypripedium calceolus (Orchidaceae) Mitochondrial DNA. Part B. Resources chloroplast genome cypripedium calceolus rare orchid conservation |
| title | The complete chloroplast genome sequence of the threatened Cypripedium calceolus (Orchidaceae) |
| title_full | The complete chloroplast genome sequence of the threatened Cypripedium calceolus (Orchidaceae) |
| title_fullStr | The complete chloroplast genome sequence of the threatened Cypripedium calceolus (Orchidaceae) |
| title_full_unstemmed | The complete chloroplast genome sequence of the threatened Cypripedium calceolus (Orchidaceae) |
| title_short | The complete chloroplast genome sequence of the threatened Cypripedium calceolus (Orchidaceae) |
| title_sort | complete chloroplast genome sequence of the threatened cypripedium calceolus orchidaceae |
| topic | chloroplast genome cypripedium calceolus rare orchid conservation |
| url | http://dx.doi.org/10.1080/23802359.2019.1693933 |
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