The complete mitochondrial genome of Riccia fluitans L. (Ricciaceae, Marchantiophyta): investigation of intraspecific variations on mitochondrial genomes of R. fluitans
Riccia fluitans L. is the most common species in Riccia genus. To investigate intraspecific variations on mitochondrial genomes of R. fluitans, we completed mitochondrial genome of R. fluitans. Its length is 185,640 bp, longer than that of NC_043906 by 19 bp and it contains 74 genes (42 protein-codi...
| Main Authors: | , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2020-04-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2020.1730728 |
| _version_ | 1797639449595609088 |
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| author | Juhyeon Min Woochan Kwon Hong Xi Jongsun Park |
| author_facet | Juhyeon Min Woochan Kwon Hong Xi Jongsun Park |
| author_sort | Juhyeon Min |
| collection | DOAJ |
| description | Riccia fluitans L. is the most common species in Riccia genus. To investigate intraspecific variations on mitochondrial genomes of R. fluitans, we completed mitochondrial genome of R. fluitans. Its length is 185,640 bp, longer than that of NC_043906 by 19 bp and it contains 74 genes (42 protein-coding genes, 3 rRNAs, 28 tRNAs, and 1 pseudogene). 18 single nucleotide polymorphisms (SNPs) and 19 insertions and deletions are identified, higher than that of Marchantia polymorpha subsp. ruderalis. One non-synonymous SNP is found in ccmFN. Phylogenetic trees show that R. fluitans is clustered with Dumortiera hirsuta, requiring additional mitogenome to clarify the phylogenetic relationship. |
| first_indexed | 2024-03-11T13:16:55Z |
| format | Article |
| id | doaj.art-c830828c3713436c9f99fee91b67018f |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:16:55Z |
| publishDate | 2020-04-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-c830828c3713436c9f99fee91b67018f2023-11-03T11:00:23ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-04-01521220122210.1080/23802359.2020.17307281730728The complete mitochondrial genome of Riccia fluitans L. (Ricciaceae, Marchantiophyta): investigation of intraspecific variations on mitochondrial genomes of R. fluitansJuhyeon Min0Woochan Kwon1Hong Xi2Jongsun Park3InfoBoss Co., Ltd.InfoBoss Co., Ltd.InfoBoss Co., Ltd.InfoBoss Co., Ltd.Riccia fluitans L. is the most common species in Riccia genus. To investigate intraspecific variations on mitochondrial genomes of R. fluitans, we completed mitochondrial genome of R. fluitans. Its length is 185,640 bp, longer than that of NC_043906 by 19 bp and it contains 74 genes (42 protein-coding genes, 3 rRNAs, 28 tRNAs, and 1 pseudogene). 18 single nucleotide polymorphisms (SNPs) and 19 insertions and deletions are identified, higher than that of Marchantia polymorpha subsp. ruderalis. One non-synonymous SNP is found in ccmFN. Phylogenetic trees show that R. fluitans is clustered with Dumortiera hirsuta, requiring additional mitogenome to clarify the phylogenetic relationship.http://dx.doi.org/10.1080/23802359.2020.1730728riccia fluitansmitochondrial genomericciaceaeintraspecific variationccmfn |
| spellingShingle | Juhyeon Min Woochan Kwon Hong Xi Jongsun Park The complete mitochondrial genome of Riccia fluitans L. (Ricciaceae, Marchantiophyta): investigation of intraspecific variations on mitochondrial genomes of R. fluitans Mitochondrial DNA. Part B. Resources riccia fluitans mitochondrial genome ricciaceae intraspecific variation ccmfn |
| title | The complete mitochondrial genome of Riccia fluitans L. (Ricciaceae, Marchantiophyta): investigation of intraspecific variations on mitochondrial genomes of R. fluitans |
| title_full | The complete mitochondrial genome of Riccia fluitans L. (Ricciaceae, Marchantiophyta): investigation of intraspecific variations on mitochondrial genomes of R. fluitans |
| title_fullStr | The complete mitochondrial genome of Riccia fluitans L. (Ricciaceae, Marchantiophyta): investigation of intraspecific variations on mitochondrial genomes of R. fluitans |
| title_full_unstemmed | The complete mitochondrial genome of Riccia fluitans L. (Ricciaceae, Marchantiophyta): investigation of intraspecific variations on mitochondrial genomes of R. fluitans |
| title_short | The complete mitochondrial genome of Riccia fluitans L. (Ricciaceae, Marchantiophyta): investigation of intraspecific variations on mitochondrial genomes of R. fluitans |
| title_sort | complete mitochondrial genome of riccia fluitans l ricciaceae marchantiophyta investigation of intraspecific variations on mitochondrial genomes of r fluitans |
| topic | riccia fluitans mitochondrial genome ricciaceae intraspecific variation ccmfn |
| url | http://dx.doi.org/10.1080/23802359.2020.1730728 |
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