Deep generative models for T cell receptor protein sequences
Probabilistic models of adaptive immune repertoire sequence distributions can be used to infer the expansion of immune cells in response to stimulus, differentiate genetic from environmental factors that determine repertoire sharing, and evaluate the suitability of various target immune sequences fo...
Main Authors: | Kristian Davidsen, Branden J Olson, William S DeWitt III, Jean Feng, Elias Harkins, Philip Bradley, Frederick A Matsen IV |
---|---|
Format: | Article |
Language: | English |
Published: |
eLife Sciences Publications Ltd
2019-09-01
|
Series: | eLife |
Subjects: | |
Online Access: | https://elifesciences.org/articles/46935 |
Similar Items
-
Human T cell receptor occurrence patterns encode immune history, genetic background, and receptor specificity
by: William S DeWitt III, et al.
Published: (2018-08-01) -
Benchmarking Tree and Ancestral Sequence Inference for B Cell Receptor Sequences
by: Kristian Davidsen, et al.
Published: (2018-10-01) -
Analysis of B Cell Repertoire Dynamics Following Hepatitis B Vaccination in Humans, and Enrichment of Vaccine-specific Antibody Sequences
by: Jacob D. Galson, et al.
Published: (2015-12-01) -
sumrep: A Summary Statistic Framework for Immune Receptor Repertoire Comparison and Model Validation
by: Branden J. Olson, et al.
Published: (2019-11-01) -
Cytomegalovirus-Mediated T Cell Receptor Repertoire Perturbation Is Present in Early Life
by: Meriem Attaf, et al.
Published: (2020-09-01)