The transcriptomic (RNA-Sequencing) datasets collected in the course of floral induction in Chenopodium ficifolium 459
The transition from vegetative growth to reproduction is the essential commitment in plant life. It is triggered by environmental cues (day length, temperature, nutrients) and regulated by the very complex signaling gene network and by phytohormones. The control of flowering is well understood in Ar...
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| Format: | Article |
| Jezik: | English |
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Elsevier
2022-08-01
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| Serija: | Data in Brief |
| Teme: | |
| Online dostop: | http://www.sciencedirect.com/science/article/pii/S2352340922005352 |
| _version_ | 1828288372423000064 |
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| author | David Gutierrez-Larruscain Manuela Krüger Oushadee A.J. Abeyawardana Claudia Belz Petre I. Dobrev Radomíra Vaňková Kateřina Eliášová Zuzana Vondráková Miloslav Juříček Helena Štorchová |
| author_facet | David Gutierrez-Larruscain Manuela Krüger Oushadee A.J. Abeyawardana Claudia Belz Petre I. Dobrev Radomíra Vaňková Kateřina Eliášová Zuzana Vondráková Miloslav Juříček Helena Štorchová |
| author_sort | David Gutierrez-Larruscain |
| collection | DOAJ |
| description | The transition from vegetative growth to reproduction is the essential commitment in plant life. It is triggered by environmental cues (day length, temperature, nutrients) and regulated by the very complex signaling gene network and by phytohormones. The control of flowering is well understood in Arabidopsis thaliana and in some crops, much less is known about the other angiosperms. We performed the detailed transcriptomic survey of the course of floral induction in seedlings of Chenopodium ficifolium accession 459, a close relative of the important crop Chenopodium quinoa. It flowers earlier under short days (6 hours light) than under long days (18 hours light). Plants were sampled at the age 14, 18, 21 and 24 days in the morning and afternoon, both at long and short day, for RNA-Sequencing, and also for phytohormone analyses. We employed Illumina NovaSeq6000 platform to generate raw reads, which were cleaned and mapped against the de novo constructed transcriptome of C. ficifolium. The global gene expression levels between long and short days were pairwise compared at each time points. We identified differentially expressed genes associated with floral induction in C. ficifolium 459. Particular attention was paid to the genes responsible for phytohormone metabolism and signaling. The datasets produced by this project contributed to better understanding of the regulation of growth and development in the genus Chenopodium. |
| first_indexed | 2024-04-13T10:03:25Z |
| format | Article |
| id | doaj.art-c955bb6065a14a01b51d1c6c3603341c |
| institution | Directory Open Access Journal |
| issn | 2352-3409 |
| language | English |
| last_indexed | 2024-04-13T10:03:25Z |
| publishDate | 2022-08-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Data in Brief |
| spelling | doaj.art-c955bb6065a14a01b51d1c6c3603341c2022-12-22T02:51:11ZengElsevierData in Brief2352-34092022-08-0143108333The transcriptomic (RNA-Sequencing) datasets collected in the course of floral induction in Chenopodium ficifolium 459David Gutierrez-Larruscain0Manuela Krüger1Oushadee A.J. Abeyawardana2Claudia Belz3Petre I. Dobrev4Radomíra Vaňková5Kateřina Eliášová6Zuzana Vondráková7Miloslav Juříček8Helena Štorchová9Institute of Experimental Botany, Czech Academy of Sciences, Rozvojová 263, 16502 Prague, Czech RepublicInstitute of Experimental Botany, Czech Academy of Sciences, Rozvojová 263, 16502 Prague, Czech RepublicInstitute of Experimental Botany, Czech Academy of Sciences, Rozvojová 263, 16502 Prague, Czech RepublicInstitute of Experimental Botany, Czech Academy of Sciences, Rozvojová 263, 16502 Prague, Czech RepublicInstitute of Experimental Botany, Czech Academy of Sciences, Rozvojová 263, 16502 Prague, Czech RepublicInstitute of Experimental Botany, Czech Academy of Sciences, Rozvojová 263, 16502 Prague, Czech RepublicInstitute of Experimental Botany, Czech Academy of Sciences, Rozvojová 263, 16502 Prague, Czech RepublicInstitute of Experimental Botany, Czech Academy of Sciences, Rozvojová 263, 16502 Prague, Czech RepublicInstitute of Experimental Botany, Czech Academy of Sciences, Rozvojová 263, 16502 Prague, Czech RepublicCorresponding author.; Institute of Experimental Botany, Czech Academy of Sciences, Rozvojová 263, 16502 Prague, Czech RepublicThe transition from vegetative growth to reproduction is the essential commitment in plant life. It is triggered by environmental cues (day length, temperature, nutrients) and regulated by the very complex signaling gene network and by phytohormones. The control of flowering is well understood in Arabidopsis thaliana and in some crops, much less is known about the other angiosperms. We performed the detailed transcriptomic survey of the course of floral induction in seedlings of Chenopodium ficifolium accession 459, a close relative of the important crop Chenopodium quinoa. It flowers earlier under short days (6 hours light) than under long days (18 hours light). Plants were sampled at the age 14, 18, 21 and 24 days in the morning and afternoon, both at long and short day, for RNA-Sequencing, and also for phytohormone analyses. We employed Illumina NovaSeq6000 platform to generate raw reads, which were cleaned and mapped against the de novo constructed transcriptome of C. ficifolium. The global gene expression levels between long and short days were pairwise compared at each time points. We identified differentially expressed genes associated with floral induction in C. ficifolium 459. Particular attention was paid to the genes responsible for phytohormone metabolism and signaling. The datasets produced by this project contributed to better understanding of the regulation of growth and development in the genus Chenopodium.http://www.sciencedirect.com/science/article/pii/S2352340922005352FloweringGene expressionPhytohormonesOxidative stressPhotoperiod |
| spellingShingle | David Gutierrez-Larruscain Manuela Krüger Oushadee A.J. Abeyawardana Claudia Belz Petre I. Dobrev Radomíra Vaňková Kateřina Eliášová Zuzana Vondráková Miloslav Juříček Helena Štorchová The transcriptomic (RNA-Sequencing) datasets collected in the course of floral induction in Chenopodium ficifolium 459 Data in Brief Flowering Gene expression Phytohormones Oxidative stress Photoperiod |
| title | The transcriptomic (RNA-Sequencing) datasets collected in the course of floral induction in Chenopodium ficifolium 459 |
| title_full | The transcriptomic (RNA-Sequencing) datasets collected in the course of floral induction in Chenopodium ficifolium 459 |
| title_fullStr | The transcriptomic (RNA-Sequencing) datasets collected in the course of floral induction in Chenopodium ficifolium 459 |
| title_full_unstemmed | The transcriptomic (RNA-Sequencing) datasets collected in the course of floral induction in Chenopodium ficifolium 459 |
| title_short | The transcriptomic (RNA-Sequencing) datasets collected in the course of floral induction in Chenopodium ficifolium 459 |
| title_sort | transcriptomic rna sequencing datasets collected in the course of floral induction in chenopodium ficifolium 459 |
| topic | Flowering Gene expression Phytohormones Oxidative stress Photoperiod |
| url | http://www.sciencedirect.com/science/article/pii/S2352340922005352 |
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