Acquired resistance to anti-PD1 therapy in patients with NSCLC associates with immunosuppressive T cell phenotype

Abstract Immune checkpoint inhibitor treatment has the potential to prolong survival in non-small cell lung cancer (NSCLC), however, some of the patients develop resistance following initial response. Here, we analyze the immune phenotype of matching tumor samples from a cohort of NSCLC patients sho...

Full description

Bibliographic Details
Main Authors: Stefanie Hiltbrunner, Lena Cords, Sabrina Kasser, Sandra N. Freiberger, Susanne Kreutzer, Nora C. Toussaint, Linda Grob, Isabelle Opitz, Michael Messerli, Martin Zoche, Alex Soltermann, Markus Rechsteiner, Maries van den Broek, Bernd Bodenmiller, Alessandra Curioni-Fontecedro
Format: Article
Language:English
Published: Nature Portfolio 2023-08-01
Series:Nature Communications
Online Access:https://doi.org/10.1038/s41467-023-40745-5
_version_ 1827709565495410688
author Stefanie Hiltbrunner
Lena Cords
Sabrina Kasser
Sandra N. Freiberger
Susanne Kreutzer
Nora C. Toussaint
Linda Grob
Isabelle Opitz
Michael Messerli
Martin Zoche
Alex Soltermann
Markus Rechsteiner
Maries van den Broek
Bernd Bodenmiller
Alessandra Curioni-Fontecedro
author_facet Stefanie Hiltbrunner
Lena Cords
Sabrina Kasser
Sandra N. Freiberger
Susanne Kreutzer
Nora C. Toussaint
Linda Grob
Isabelle Opitz
Michael Messerli
Martin Zoche
Alex Soltermann
Markus Rechsteiner
Maries van den Broek
Bernd Bodenmiller
Alessandra Curioni-Fontecedro
author_sort Stefanie Hiltbrunner
collection DOAJ
description Abstract Immune checkpoint inhibitor treatment has the potential to prolong survival in non-small cell lung cancer (NSCLC), however, some of the patients develop resistance following initial response. Here, we analyze the immune phenotype of matching tumor samples from a cohort of NSCLC patients showing good initial response to immune checkpoint inhibitors, followed by acquired resistance at later time points. By using imaging mass cytometry and whole exome and RNA sequencing, we detect two patterns of resistance¨: One group of patients is characterized by reduced numbers of tumor-infiltrating CD8+ T cells and reduced expression of PD-L1 after development of resistance, whereas the other group shows high CD8+ T cell infiltration and high expression of PD-L1 in addition to markedly elevated expression of other immune-inhibitory molecules. In two cases, we detect downregulation of type I and II IFN pathways following progression to resistance, which could lead to an impaired anti-tumor immune response. This study thus captures the development of immune checkpoint inhibitor resistance as it progresses and deepens our mechanistic understanding of immunotherapy response in NSCLC.
first_indexed 2024-03-10T17:23:44Z
format Article
id doaj.art-c99e4e76f6b544649dae1c58e4b5b5c4
institution Directory Open Access Journal
issn 2041-1723
language English
last_indexed 2024-03-10T17:23:44Z
publishDate 2023-08-01
publisher Nature Portfolio
record_format Article
series Nature Communications
spelling doaj.art-c99e4e76f6b544649dae1c58e4b5b5c42023-11-20T10:16:05ZengNature PortfolioNature Communications2041-17232023-08-0114111410.1038/s41467-023-40745-5Acquired resistance to anti-PD1 therapy in patients with NSCLC associates with immunosuppressive T cell phenotypeStefanie Hiltbrunner0Lena Cords1Sabrina Kasser2Sandra N. Freiberger3Susanne Kreutzer4Nora C. Toussaint5Linda Grob6Isabelle Opitz7Michael Messerli8Martin Zoche9Alex Soltermann10Markus Rechsteiner11Maries van den Broek12Bernd Bodenmiller13Alessandra Curioni-Fontecedro14Department of Medical Oncology and Hematology, University Hospital ZurichUniversity of ZurichDepartment of Medical Oncology and Hematology, University Hospital ZurichDepartment of Pathology and Molecular Pathology, University Hospital ZurichFunctional Genomics Center Zurich, ETH and University of ZurichNEXUS Personalized Health Technologies, ETH ZurichNEXUS Personalized Health Technologies, ETH ZurichDepartment of Thoracic Surgery, University Hospital ZurichUniversity of ZurichDepartment of Pathology and Molecular Pathology, University Hospital ZurichDepartment of Pathology and Molecular Pathology, University Hospital ZurichDepartment of Pathology and Molecular Pathology, University Hospital ZurichUniversity of ZurichUniversity of ZurichDepartment of Medical Oncology and Hematology, University Hospital ZurichAbstract Immune checkpoint inhibitor treatment has the potential to prolong survival in non-small cell lung cancer (NSCLC), however, some of the patients develop resistance following initial response. Here, we analyze the immune phenotype of matching tumor samples from a cohort of NSCLC patients showing good initial response to immune checkpoint inhibitors, followed by acquired resistance at later time points. By using imaging mass cytometry and whole exome and RNA sequencing, we detect two patterns of resistance¨: One group of patients is characterized by reduced numbers of tumor-infiltrating CD8+ T cells and reduced expression of PD-L1 after development of resistance, whereas the other group shows high CD8+ T cell infiltration and high expression of PD-L1 in addition to markedly elevated expression of other immune-inhibitory molecules. In two cases, we detect downregulation of type I and II IFN pathways following progression to resistance, which could lead to an impaired anti-tumor immune response. This study thus captures the development of immune checkpoint inhibitor resistance as it progresses and deepens our mechanistic understanding of immunotherapy response in NSCLC.https://doi.org/10.1038/s41467-023-40745-5
spellingShingle Stefanie Hiltbrunner
Lena Cords
Sabrina Kasser
Sandra N. Freiberger
Susanne Kreutzer
Nora C. Toussaint
Linda Grob
Isabelle Opitz
Michael Messerli
Martin Zoche
Alex Soltermann
Markus Rechsteiner
Maries van den Broek
Bernd Bodenmiller
Alessandra Curioni-Fontecedro
Acquired resistance to anti-PD1 therapy in patients with NSCLC associates with immunosuppressive T cell phenotype
Nature Communications
title Acquired resistance to anti-PD1 therapy in patients with NSCLC associates with immunosuppressive T cell phenotype
title_full Acquired resistance to anti-PD1 therapy in patients with NSCLC associates with immunosuppressive T cell phenotype
title_fullStr Acquired resistance to anti-PD1 therapy in patients with NSCLC associates with immunosuppressive T cell phenotype
title_full_unstemmed Acquired resistance to anti-PD1 therapy in patients with NSCLC associates with immunosuppressive T cell phenotype
title_short Acquired resistance to anti-PD1 therapy in patients with NSCLC associates with immunosuppressive T cell phenotype
title_sort acquired resistance to anti pd1 therapy in patients with nsclc associates with immunosuppressive t cell phenotype
url https://doi.org/10.1038/s41467-023-40745-5
work_keys_str_mv AT stefaniehiltbrunner acquiredresistancetoantipd1therapyinpatientswithnsclcassociateswithimmunosuppressivetcellphenotype
AT lenacords acquiredresistancetoantipd1therapyinpatientswithnsclcassociateswithimmunosuppressivetcellphenotype
AT sabrinakasser acquiredresistancetoantipd1therapyinpatientswithnsclcassociateswithimmunosuppressivetcellphenotype
AT sandranfreiberger acquiredresistancetoantipd1therapyinpatientswithnsclcassociateswithimmunosuppressivetcellphenotype
AT susannekreutzer acquiredresistancetoantipd1therapyinpatientswithnsclcassociateswithimmunosuppressivetcellphenotype
AT noractoussaint acquiredresistancetoantipd1therapyinpatientswithnsclcassociateswithimmunosuppressivetcellphenotype
AT lindagrob acquiredresistancetoantipd1therapyinpatientswithnsclcassociateswithimmunosuppressivetcellphenotype
AT isabelleopitz acquiredresistancetoantipd1therapyinpatientswithnsclcassociateswithimmunosuppressivetcellphenotype
AT michaelmesserli acquiredresistancetoantipd1therapyinpatientswithnsclcassociateswithimmunosuppressivetcellphenotype
AT martinzoche acquiredresistancetoantipd1therapyinpatientswithnsclcassociateswithimmunosuppressivetcellphenotype
AT alexsoltermann acquiredresistancetoantipd1therapyinpatientswithnsclcassociateswithimmunosuppressivetcellphenotype
AT markusrechsteiner acquiredresistancetoantipd1therapyinpatientswithnsclcassociateswithimmunosuppressivetcellphenotype
AT mariesvandenbroek acquiredresistancetoantipd1therapyinpatientswithnsclcassociateswithimmunosuppressivetcellphenotype
AT berndbodenmiller acquiredresistancetoantipd1therapyinpatientswithnsclcassociateswithimmunosuppressivetcellphenotype
AT alessandracurionifontecedro acquiredresistancetoantipd1therapyinpatientswithnsclcassociateswithimmunosuppressivetcellphenotype