The complete chloroplast genome assembly of Amorphophallus kiusianus makino 1913 (araceae) from Southern China
AbstractThe mountainous region of southern China has been characterized by its complicated environment and topography. Amorphophallus kiusianus Makino 1913 is a representative species of extreme habitat preference that resides mainly in this region. To help study the genetic differentiation mechanis...
| Main Authors: | , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Taylor & Francis Group
2024-04-01
|
| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | https://www.tandfonline.com/doi/10.1080/23802359.2024.2342934 |
| _version_ | 1827263089372823552 |
|---|---|
| author | Yong Gao Si Yin |
| author_facet | Yong Gao Si Yin |
| author_sort | Yong Gao |
| collection | DOAJ |
| description | AbstractThe mountainous region of southern China has been characterized by its complicated environment and topography. Amorphophallus kiusianus Makino 1913 is a representative species of extreme habitat preference that resides mainly in this region. To help study the genetic differentiation mechanisms of A. kiusianus populations, we sequenced the first chloroplast genome of this species using next-generation sequencing. The chloroplast genome was 166,269 bp in length with an average GC content of 36% (GenBank accession number: PP072243). The lengths of the large single-copy region (LSC), small single-copy region (SSC), and two inverted repeats (IRs) were 90,701 bp, 14,802 bp, 31,383 bp, and 31,383 bp, respectively. One hundred and twenty-nine genes were annotated in the chloroplast genome, including 84 protein-coding genes, 8 rRNA genes, and 37 tRNA genes. The phylogenetic tree suggested a close relationship among A. kiusianus, A. yunnanensis, and A. coaetaneus. The chloroplast genome reported in this study provides valuable genomic resources for the future phylogeographic research of A. kiusianus. |
| first_indexed | 2024-04-24T08:42:33Z |
| format | Article |
| id | doaj.art-c9a95abe7ded4ee79a924f5dd8294a12 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2025-03-22T03:24:37Z |
| publishDate | 2024-04-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-c9a95abe7ded4ee79a924f5dd8294a122024-04-29T11:11:55ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592024-04-019452252610.1080/23802359.2024.2342934The complete chloroplast genome assembly of Amorphophallus kiusianus makino 1913 (araceae) from Southern ChinaYong Gao0Si Yin1College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, Yunnan, ChinaCollege of Biological Resource and Food Engineering, Qujing Normal University, Qujing, Yunnan, ChinaAbstractThe mountainous region of southern China has been characterized by its complicated environment and topography. Amorphophallus kiusianus Makino 1913 is a representative species of extreme habitat preference that resides mainly in this region. To help study the genetic differentiation mechanisms of A. kiusianus populations, we sequenced the first chloroplast genome of this species using next-generation sequencing. The chloroplast genome was 166,269 bp in length with an average GC content of 36% (GenBank accession number: PP072243). The lengths of the large single-copy region (LSC), small single-copy region (SSC), and two inverted repeats (IRs) were 90,701 bp, 14,802 bp, 31,383 bp, and 31,383 bp, respectively. One hundred and twenty-nine genes were annotated in the chloroplast genome, including 84 protein-coding genes, 8 rRNA genes, and 37 tRNA genes. The phylogenetic tree suggested a close relationship among A. kiusianus, A. yunnanensis, and A. coaetaneus. The chloroplast genome reported in this study provides valuable genomic resources for the future phylogeographic research of A. kiusianus.https://www.tandfonline.com/doi/10.1080/23802359.2024.2342934Amorphophallus kiusianusaraceaechloroplast genomephylogenetic analysis |
| spellingShingle | Yong Gao Si Yin The complete chloroplast genome assembly of Amorphophallus kiusianus makino 1913 (araceae) from Southern China Mitochondrial DNA. Part B. Resources Amorphophallus kiusianus araceae chloroplast genome phylogenetic analysis |
| title | The complete chloroplast genome assembly of Amorphophallus kiusianus makino 1913 (araceae) from Southern China |
| title_full | The complete chloroplast genome assembly of Amorphophallus kiusianus makino 1913 (araceae) from Southern China |
| title_fullStr | The complete chloroplast genome assembly of Amorphophallus kiusianus makino 1913 (araceae) from Southern China |
| title_full_unstemmed | The complete chloroplast genome assembly of Amorphophallus kiusianus makino 1913 (araceae) from Southern China |
| title_short | The complete chloroplast genome assembly of Amorphophallus kiusianus makino 1913 (araceae) from Southern China |
| title_sort | complete chloroplast genome assembly of amorphophallus kiusianus makino 1913 araceae from southern china |
| topic | Amorphophallus kiusianus araceae chloroplast genome phylogenetic analysis |
| url | https://www.tandfonline.com/doi/10.1080/23802359.2024.2342934 |
| work_keys_str_mv | AT yonggao thecompletechloroplastgenomeassemblyofamorphophalluskiusianusmakino1913araceaefromsouthernchina AT siyin thecompletechloroplastgenomeassemblyofamorphophalluskiusianusmakino1913araceaefromsouthernchina AT yonggao completechloroplastgenomeassemblyofamorphophalluskiusianusmakino1913araceaefromsouthernchina AT siyin completechloroplastgenomeassemblyofamorphophalluskiusianusmakino1913araceaefromsouthernchina |