A Practical Guide to Visualization and Statistical Analysis of R. solanacearum Infection Data Using R
This paper describes and summarizes approaches for visualization and statistical analysis using data from Ralstonia solanacearum infection experiments based on methods and concepts that are broadly applicable. Members of the R. solanacearum species complex cause bacterial wilt disease. Bacterial wil...
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| Format: | Article |
| Language: | English |
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Frontiers Media S.A.
2017-04-01
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| Series: | Frontiers in Plant Science |
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| Online Access: | http://journal.frontiersin.org/article/10.3389/fpls.2017.00623/full |
| _version_ | 1811241788063612928 |
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| author | Niklas Schandry |
| author_facet | Niklas Schandry |
| author_sort | Niklas Schandry |
| collection | DOAJ |
| description | This paper describes and summarizes approaches for visualization and statistical analysis using data from Ralstonia solanacearum infection experiments based on methods and concepts that are broadly applicable. Members of the R. solanacearum species complex cause bacterial wilt disease. Bacterial wilt is a lethal plant disease and has been studied for over 100 years. During this time various methods to quantify disease and different ways to analyze the generated data have been employed. Here, I aim to provide a general background on three distinct and commonly used measures of disease: the area under the disease progression curve, longitudinal recordings of disease severity and host survival. I will discuss how one can proceed with visualization, statistical analysis, and interpretation using different datasets while revisiting the general concepts of statistical analysis. Datasets and R code to perform all analyses discussed here are included in the supplement. |
| first_indexed | 2024-04-12T13:41:34Z |
| format | Article |
| id | doaj.art-ca941135cdc34084b315ad038a5982c0 |
| institution | Directory Open Access Journal |
| issn | 1664-462X |
| language | English |
| last_indexed | 2024-04-12T13:41:34Z |
| publishDate | 2017-04-01 |
| publisher | Frontiers Media S.A. |
| record_format | Article |
| series | Frontiers in Plant Science |
| spelling | doaj.art-ca941135cdc34084b315ad038a5982c02022-12-22T03:30:50ZengFrontiers Media S.A.Frontiers in Plant Science1664-462X2017-04-01810.3389/fpls.2017.00623254084A Practical Guide to Visualization and Statistical Analysis of R. solanacearum Infection Data Using RNiklas SchandryThis paper describes and summarizes approaches for visualization and statistical analysis using data from Ralstonia solanacearum infection experiments based on methods and concepts that are broadly applicable. Members of the R. solanacearum species complex cause bacterial wilt disease. Bacterial wilt is a lethal plant disease and has been studied for over 100 years. During this time various methods to quantify disease and different ways to analyze the generated data have been employed. Here, I aim to provide a general background on three distinct and commonly used measures of disease: the area under the disease progression curve, longitudinal recordings of disease severity and host survival. I will discuss how one can proceed with visualization, statistical analysis, and interpretation using different datasets while revisiting the general concepts of statistical analysis. Datasets and R code to perform all analyses discussed here are included in the supplement.http://journal.frontiersin.org/article/10.3389/fpls.2017.00623/fullRalstonia solanacearumdata analysislinear mixed effects modelsurvival analysisregression analysisnon-parametric testing |
| spellingShingle | Niklas Schandry A Practical Guide to Visualization and Statistical Analysis of R. solanacearum Infection Data Using R Frontiers in Plant Science Ralstonia solanacearum data analysis linear mixed effects model survival analysis regression analysis non-parametric testing |
| title | A Practical Guide to Visualization and Statistical Analysis of R. solanacearum Infection Data Using R |
| title_full | A Practical Guide to Visualization and Statistical Analysis of R. solanacearum Infection Data Using R |
| title_fullStr | A Practical Guide to Visualization and Statistical Analysis of R. solanacearum Infection Data Using R |
| title_full_unstemmed | A Practical Guide to Visualization and Statistical Analysis of R. solanacearum Infection Data Using R |
| title_short | A Practical Guide to Visualization and Statistical Analysis of R. solanacearum Infection Data Using R |
| title_sort | practical guide to visualization and statistical analysis of r solanacearum infection data using r |
| topic | Ralstonia solanacearum data analysis linear mixed effects model survival analysis regression analysis non-parametric testing |
| url | http://journal.frontiersin.org/article/10.3389/fpls.2017.00623/full |
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